tvalerius + database   37

Mouse Phenome Database at JAX
Search by phenotype. Look for similar models.
mouse-workshop  mouse  database  phenotype 
april 2017 by tvalerius
MGI-Mouse Genome Informatics-The international database resource for the laboratory mouse
Includes a Cre line search tool too. Links to reagents for genes, and expression data.
mouse  mouse-workshop  reference  database  genome 
april 2017 by tvalerius
Dietary Supplements Labels Database
Lists supplements by name and gives label information. Good for looking up the ingredients quickly.
health  nutrition  database 
june 2012 by tvalerius
Foods List Database
List of nutrients in all kinds of food. Searchable.
health  nutrition  database 
june 2012 by tvalerius
ToppGene
Use for fun with gene lists from microarray profiling analysis.
microarray  bioinformatics  statistics  database  tools 
march 2011 by tvalerius
NCBI Taxonomy Homepage
Links to all Taxonomy IDs used in Genbank/NCBI.
biology  science  reference  database  ncbi  taxonomy 
december 2009 by tvalerius
Addgene - A Better Way To Share Plasmids
Plasmid repository and distribution company. The idea is to add published reagents to this repository to remove the burden of filling requests yourself. I have ordered a few plasmids from them and the system works well. They streamline the ever more burdensome MTA process and things go quickly.
plasmid  research  dna  biology  vector  database 
december 2009 by tvalerius
DBTSS HOME
Transcriptional Start Site database. Tools look interesting but need to test a few examples. Data based on work in NIH3T3 cells. A place to check when designing constructs.
biology  transgenics  transgenic  database  molecular  molecularbiology 
november 2009 by tvalerius
Ironic Software
TagIT looks interesting for tagging files. I currently use the Spotlight comments to tag, but I don't have a view of all my tags.
software  mac  organization  database  tagging 
june 2009 by tvalerius
Gudmap Gene Expression Database
This database includes microarrays and in situ hybridizations of the urogenital system. Focused on the developing kidney. This is all mouse data.
science  biology  database  datamining  kidney 
january 2009 by tvalerius
Human Protein Atlas
Few thousand antibodies used for IHC in a screen of human tissue biopsies. Images of the results shown with high resolution viewers, expression scored and searchable.
biology  database  histology  protein  science  antibodies  resource 
november 2007 by tvalerius
THE KIDNEY DEVELOPMENT DATABASE
Jamie's site of know gene expression patterns.
science  biology  kidney  database 
august 2007 by tvalerius
OME - Open Microscopy Environment
Attempt at a comprehensive image management solution for microscopy. I installed this on a OSX system as a local server and it functions just fine. Limitation is in direct imports from our confocal - no plugin yet so too much retyping. Needs to mature.
imaging  metadata  microscopy  database  biology 
july 2007 by tvalerius
Index of /ofc/Archive
FANTOM2 information for the DNAbook. Metadata for all the clones in the collection.
biology  clones  bioinformatics  database  genes  cdna 
may 2007 by tvalerius
Index of ftp://ftp.informatics.jax.org/pub/reports/
FTP site for flat files of MGI. See the index link for more description.
bioinformatics  database  biology 
may 2007 by tvalerius
UCSC Genome Browser Home
Excellent online sequence info with ability to add custom tracks and export high quality results for presentations.
genomics  database  mouse  biology  sequence 
may 2007 by tvalerius
MySQL Commands
Simple sheet of basic MySQL commands.
database  howto  language  programming  reference  mysql  commands 
may 2007 by tvalerius
MGI Data and Statistical Reports
Download site for MGI files. Good for mapping geneIDs and MGI numbers in custom databases.
biology  genomics  database  mouse  download  microarray 
may 2007 by tvalerius

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