nhaliday + counterexample   36

Who We Are | West Hunter
I’m going to review David Reich’s new book, Who We Are and How We Got Here. Extensively: in a sense I’ve already been doing this for a long time. Probably there will be a podcast. The GoFundMe link is here. You can also send money via Paypal (Use the donate button), or bitcoins to 1Jv4cu1wETM5Xs9unjKbDbCrRF2mrjWXr5. In-kind donations, such as orichalcum or mithril, are always appreciated.

This is the book about the application of ancient DNA to prehistory and history.

height difference between northern and southern europeans: https://westhunt.wordpress.com/2018/03/29/who-we-are-1/
mixing, genocide of males, etc.: https://westhunt.wordpress.com/2018/03/29/who-we-are-2-purity-of-essence/
rapid change in polygenic traits (appearance by Kevin Mitchell and funny jab at Brad Delong ("regmonkey")): https://westhunt.wordpress.com/2018/03/30/rapid-change-in-polygenic-traits/
schiz, bipolar, and IQ: https://westhunt.wordpress.com/2018/03/30/rapid-change-in-polygenic-traits/#comment-105605
Dan Graur being dumb: https://westhunt.wordpress.com/2018/04/02/the-usual-suspects/
prediction of neanderthal mixture and why: https://westhunt.wordpress.com/2018/04/03/who-we-are-3-neanderthals/
New Guineans tried to use Denisovan admixture to avoid UN sanctions (by "not being human"): https://westhunt.wordpress.com/2018/04/04/who-we-are-4-denisovans/
also some commentary on decline of Out-of-Africa, including:
"Homo Naledi, a small-brained homonin identified from recently discovered fossils in South Africa, appears to have hung around way later that you’d expect (up to 200,000 years ago, maybe later) than would be the case if modern humans had occupied that area back then. To be blunt, we would have eaten them."

Live Not By Lies: https://westhunt.wordpress.com/2018/04/08/live-not-by-lies/
Next he slams people that suspect that upcoming genetic genetic analysis will, in most cases, confirm traditional stereotypes about race – the way the world actually looks.

The people Reich dumps on are saying perfectly reasonable things. He criticizes Henry Harpending for saying that he’d never seen an African with a hobby. Of course, Henry had actually spent time in Africa, and that’s what he’d seen. The implication is that people in Malthusian farming societies – which Africa was not – were selected to want to work, even where there was no immediate necessity to do so. Thus hobbies, something like a gerbil running in an exercise wheel.

He criticized Nicholas Wade, for saying that different races have different dispositions. Wade’s book wasn’t very good, but of course personality varies by race: Darwin certainly thought so. You can see differences at birth. Cover a baby’s nose with a cloth: Chinese and Navajo babies quietly breathe through their mouth, European and African babies fuss and fight.

Then he attacks Watson, for asking when Reich was going to look at Jewish genetics – the kind that has led to greater-than-average intelligence. Watson was undoubtedly trying to get a rise out of Reich, but it’s a perfectly reasonable question. Ashkenazi Jews are smarter than the average bear and everybody knows it. Selection is the only possible explanation, and the conditions in the Middle ages – white-collar job specialization and a high degree of endogamy, were just what the doctor ordered.

Watson’s a prick, but he’s a great prick, and what he said was correct. Henry was a prince among men, and Nick Wade is a decent guy as well. Reich is totally out of line here: he’s being a dick.

Now Reich may be trying to burnish his anti-racist credentials, which surely need some renewal after having pointing out that race as colloquially used is pretty reasonable, there’s no reason pops can’t be different, people that said otherwise ( like Lewontin, Gould, Montagu, etc. ) were lying, Aryans conquered Europe and India, while we’re tied to the train tracks with scary genetic results coming straight at us. I don’t care: he’s being a weasel, slandering the dead and abusing the obnoxious old genius who laid the foundations of his field. Reich will also get old someday: perhaps he too will someday lose track of all the nonsense he’s supposed to say, or just stop caring. Maybe he already has… I’m pretty sure that Reich does not like lying – which is why he wrote this section of the book (not at all logically necessary for his exposition of the ancient DNA work) but the required complex juggling of lies and truth required to get past the demented gatekeepers of our society may not be his forte. It has been said that if it was discovered that someone in the business was secretly an android, David Reich would be the prime suspect. No Talleyrand he.

https://westhunt.wordpress.com/2018/04/12/who-we-are-6-the-americas/
The population that accounts for the vast majority of Native American ancestry, which we will call Amerinds, came into existence somewhere in northern Asia. It was formed from a mix of Ancient North Eurasians and a population related to the Han Chinese – about 40% ANE and 60% proto-Chinese. Is looks as if most of the paternal ancestry was from the ANE, while almost all of the maternal ancestry was from the proto-Han. [Aryan-Transpacific ?!?] This formation story – ANE boys, East-end girls – is similar to the formation story for the Indo-Europeans.

https://westhunt.wordpress.com/2018/04/18/who-we-are-7-africa/
In some ways, on some questions, learning more from genetics has left us less certain. At this point we really don’t know where anatomically humans originated. Greater genetic variety in sub-Saharan African has been traditionally considered a sign that AMH originated there, but it possible that we originated elsewhere, perhaps in North Africa or the Middle East, and gained extra genetic variation when we moved into sub-Saharan Africa and mixed with various archaic groups that already existed. One consideration is that finding recent archaic admixture in a population may well be a sign that modern humans didn’t arise in that region ( like language substrates) – which makes South Africa and West Africa look less likely. The long-continued existence of homo naledi in South Africa suggests that modern humans may not have been there for all that long – if we had co-existed with homo naledi, they probably wouldn’t lasted long. The oldest known skull that is (probably) AMh was recently found in Morocco, while modern humans remains, already known from about 100,000 years ago in Israel, have recently been found in northern Saudi Arabia.

While work by Nick Patterson suggests that modern humans were formed by a fusion between two long-isolated populations, a bit less than half a million years ago.

So: genomics had made recent history Africa pretty clear. Bantu agriculuralists expanded and replaced hunter-gatherers, farmers and herders from the Middle East settled North Africa, Egypt and northeaat Africa, while Nilotic herdsmen expanded south from the Sudan. There are traces of earlier patterns and peoples, but today, only traces. As for questions back further in time, such as the origins of modern humans – we thought we knew, and now we know we don’t. But that’s progress.

https://westhunt.wordpress.com/2018/04/18/reichs-journey/
David Reich’s professional path must have shaped his perspective on the social sciences. Look at the record. He starts his professional career examining the role of genetics in the elevated prostate cancer risk seen in African-American men. Various social-science fruitcakes oppose him even looking at the question of ancestry ( African vs European). But they were wrong: certain African-origin alleles explain the increased risk. Anthropologists (and human geneticists) were sure (based on nothing) that modern humans hadn’t interbred with Neanderthals – but of course that happened. Anthropologists and archaeologists knew that Gustaf Kossina couldn’t have been right when he said that widespread material culture corresponded to widespread ethnic groups, and that migration was the primary explanation for changes in the archaeological record – but he was right. They knew that the Indo-European languages just couldn’t have been imposed by fire and sword – but Reich’s work proved them wrong. Lots of people – the usual suspects plus Hindu nationalists – were sure that the AIT ( Aryan Invasion Theory) was wrong, but it looks pretty good today.

Some sociologists believed that caste in India was somehow imposed or significantly intensified by the British – but it turns out that most jatis have been almost perfectly endogamous for two thousand years or more…

It may be that Reich doesn’t take these guys too seriously anymore. Why should he?

varnas, jatis, aryan invastion theory: https://westhunt.wordpress.com/2018/04/22/who-we-are-8-india/

europe and EEF+WHG+ANE: https://westhunt.wordpress.com/2018/05/01/who-we-are-9-europe/

https://www.nationalreview.com/2018/03/book-review-david-reich-human-genes-reveal-history/
The massive mixture events that occurred in the recent past to give rise to Europeans and South Asians, to name just two groups, were likely “male mediated.” That’s another way of saying that men on the move took local women as brides or concubines. In the New World there are many examples of this, whether it be among African Americans, where most European ancestry seems to come through men, or in Latin America, where conquistadores famously took local women as paramours. Both of these examples are disquieting, and hint at the deep structural roots of patriarchal inequality and social subjugation that form the backdrop for the emergence of many modern peoples.
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march 2018 by nhaliday
multivariate analysis - Is it possible to have a pair of Gaussian random variables for which the joint distribution is not Gaussian? - Cross Validated
The bivariate normal distribution is the exception, not the rule!

It is important to recognize that "almost all" joint distributions with normal marginals are not the bivariate normal distribution. That is, the common viewpoint that joint distributions with normal marginals that are not the bivariate normal are somehow "pathological", is a bit misguided.

Certainly, the multivariate normal is extremely important due to its stability under linear transformations, and so receives the bulk of attention in applications.

note: there is a multivariate central limit theorem, so those such applications have no problem
nibble  q-n-a  overflow  stats  math  acm  probability  distribution  gotchas  intricacy  characterization  structure  composition-decomposition  counterexample  limits  concentration-of-measure 
october 2017 by nhaliday
measure theory - Continuous function a.e. - Mathematics Stack Exchange
- note: Riemann integrable iff continuous a.e. (see Wheeden-Zygmund 5.54)
- equal a.e. to continuous f, but not continuous a.e.: characteristic function of rationals
- continuous a.e., but not equal a.e. to continuous f: step function
- continuous a.e., w/ uncountably many discontinuities: characteristic function of Cantor set
q-n-a  overflow  math  math.CA  counterexample  list  measure  smoothness  singularity  nibble  integral 
january 2017 by nhaliday
Existence of the moment generating function and variance - Cross Validated
This question provides a nice opportunity to collect some facts on moment-generating functions (mgf).

In the answer below, we do the following:
1. Show that if the mgf is finite for at least one (strictly) positive value and one negative value, then all positive moments of X are finite (including nonintegral moments).
2. Prove that the condition in the first item above is equivalent to the distribution of X having exponentially bounded tails. In other words, the tails of X fall off at least as fast as those of an exponential random variable Z (up to a constant).
3. Provide a quick note on the characterization of the distribution by its mgf provided it satisfies the condition in item 1.
4. Explore some examples and counterexamples to aid our intuition and, particularly, to show that we should not read undue importance into the lack of finiteness of the mgf.
q-n-a  overflow  math  stats  acm  probability  characterization  concept  moments  distribution  examples  counterexample  tails  rigidity  nibble  existence  s:null  convergence  series 
january 2017 by nhaliday
Cantor function - Wikipedia
- uniformly continuous but not absolutely continuous
- derivative zero almost everywhere but not constant
- see also: http://mathoverflow.net/questions/31603/why-do-probabilists-take-random-variables-to-be-borel-and-not-lebesgue-measura/31609#31609 (the exercise mentioned uses c(x)+x for c the Cantor function)
math  math.CA  counterexample  wiki  reference  multi  math.FA  atoms  measure  smoothness  singularity  nibble 
january 2017 by nhaliday
Shtetl-Optimized » Blog Archive » Why I Am Not An Integrated Information Theorist (or, The Unconscious Expander)
In my opinion, how to construct a theory that tells us which physical systems are conscious and which aren’t—giving answers that agree with “common sense” whenever the latter renders a verdict—is one of the deepest, most fascinating problems in all of science. Since I don’t know a standard name for the problem, I hereby call it the Pretty-Hard Problem of Consciousness. Unlike with the Hard Hard Problem, I don’t know of any philosophical reason why the Pretty-Hard Problem should be inherently unsolvable; but on the other hand, humans seem nowhere close to solving it (if we had solved it, then we could reduce the abortion, animal rights, and strong AI debates to “gentlemen, let us calculate!”).

Now, I regard IIT as a serious, honorable attempt to grapple with the Pretty-Hard Problem of Consciousness: something concrete enough to move the discussion forward. But I also regard IIT as a failed attempt on the problem. And I wish people would recognize its failure, learn from it, and move on.

In my view, IIT fails to solve the Pretty-Hard Problem because it unavoidably predicts vast amounts of consciousness in physical systems that no sane person would regard as particularly “conscious” at all: indeed, systems that do nothing but apply a low-density parity-check code, or other simple transformations of their input data. Moreover, IIT predicts not merely that these systems are “slightly” conscious (which would be fine), but that they can be unboundedly more conscious than humans are.

To justify that claim, I first need to define Φ. Strikingly, despite the large literature about Φ, I had a hard time finding a clear mathematical definition of it—one that not only listed formulas but fully defined the structures that the formulas were talking about. Complicating matters further, there are several competing definitions of Φ in the literature, including ΦDM (discrete memoryless), ΦE (empirical), and ΦAR (autoregressive), which apply in different contexts (e.g., some take time evolution into account and others don’t). Nevertheless, I think I can define Φ in a way that will make sense to theoretical computer scientists. And crucially, the broad point I want to make about Φ won’t depend much on the details of its formalization anyway.

We consider a discrete system in a state x=(x1,…,xn)∈Sn, where S is a finite alphabet (the simplest case is S={0,1}). We imagine that the system evolves via an “updating function” f:Sn→Sn. Then the question that interests us is whether the xi‘s can be partitioned into two sets A and B, of roughly comparable size, such that the updates to the variables in A don’t depend very much on the variables in B and vice versa. If such a partition exists, then we say that the computation of f does not involve “global integration of information,” which on Tononi’s theory is a defining aspect of consciousness.
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january 2017 by nhaliday

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