sr320
982
BiGill_Gene_Methylation
Getting gene sequences from oyster genome to examine DNA Methylation using BSMAP
ipython  labnotebook  sr320  oyster  methylation  bsmap  ons 
yesterday
IPython: Python at your fingertips by Fernando Pérez, Min Ragan-Kelley, Brian E. Granger, Thomas Kluyver — Marc's PyCon 2012 Notes 1.0 documentation
ipython  python  notebook 
8 days ago
Wikiomics:Repeat finding - OpenWetWare
repeat  bioinformatics  software  fish546  transposable  TE  tandem  mask 
22 days ago
DNA methylation and transcriptional noise
paper  methylation  epigenetic  gene-body  merv 
26 days ago
Bioinformatics : Welcome to Bash
grep  bioinformatics  commandline  terminal 
4 weeks ago
Options common to all BLAST+ search applications - BLAST
blast  command  bioinformatics  ncbi 
6 weeks ago
University of Washington PacBio Sequencing Services
core  pacbio 
7 weeks ago
Gradual transition from mosaic to global DNA methylation patterns during deuterostome evolution
paper  methylation  invertebrate  epigenetic 
8 weeks ago
Doing simple stuff in R - Musings from a PhD candidate
R  tutorial  data 
8 weeks ago
Genome Sciences 559 Home
bioinformatics  course  python  commandline  slides  lecture 
9 weeks ago
Blasted Bioinformatics!?: BLAST tabular output missing descriptions
blast  ncbi 
10 weeks ago
Patterns of population epigenomic diversity : Nature
paper  epigenetic  methylation  population  plant 
11 weeks ago
THE STATE OF WORLD FISHERIES AND AQUACULTURE 2012
FAO  aquaculture  economy  fisheries  statistics 
11 weeks ago
KAAS - KEGG Automatic Annotation Server
bioinformatics  Kegg  pathway  webapp  webservice 
january 2013
RetroSeq: Transposable element discovery from Illumina paired-end sequencing data
paper  transposable  TE  bioinformatics  illumina  software 
december 2012
Gephi, an open source graph visualization and manipulation software
visualization  tools  software  graphs  data  fish546  network 
december 2012
Epigenetics of Host–Pathogen Interactions: The Road Ahead and the Road Behind
review  paper  epigenetic  methylation  pathogen  host  disease 
december 2012
Dfam
TE  transposable  database  bioinformatics  fish546  repeat 
november 2012
Trinity-use-on-Blacklight-PSC - Trinity Usage on Blacklight
bioinformatics  denovo  assembly  supercomputer  trinity  cloud  fish546 
november 2012
If You Want take Your Bioinformatics Analysis to the Cloud « Homologus
bioinformatics  fish546  software  cloud 
november 2012
Chart and image gallery: 30+ free tools for data visualization and analysis - Computerworld
visualization  fish546  tools  online  software  analysis 
november 2012
BDPC : DNA methylation analysis platform
methylation  software  bioinformatics  bisulfite  fish546 
november 2012
NGS in Galaxy
ngs  galaxy  bioinformatics  visualization  fish546  tutorial 
november 2012
R Graph Gallery :: Home
statistics  visualization  fish546  R 
november 2012
Improving data visualisation for the public sector
visualization  statistics  data  fish546 
november 2012
SHERPA/RoMEO - Home - Publisher copyright policies & self-archiving
publishing  openaccess  database  journal  archive  figshare 
november 2012
Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation - Wit - 2012 - Molecular Ecology - Wiley Online Library
transcriptome  paper  abalone  haliotis  adaptation  gene  acidification  snp  rna-seq 
november 2012
Study of the antioxidant capacity in gills of the Pacific oyster Crassostrea gigas in link with its reproductive investment.
paper  oyster  crassostrea  gill  antioxidant  ros  fish441  reproduction 
november 2012
Special features of RAD Sequencing data: implications for genotyping - Davey - 2012 - Molecular Ecology - Wiley Online Library
RAD  fish546  ngs  paper  genotype  genetics  RAD-seq 
november 2012
Special Feature: Genomics of Adaptation
paper  genomics  adaptation  environment  fish441 
november 2012
Genome-wide and Caste-Specific DNA Methylomes of the Ants Camponotus floridanus and Harpegnathos saltator
methylation  ants  epigenetic  paper  splicing  telomere  reproduction  merv  exon 
november 2012
Scribblar - Free Interactive Online Whiteboard
collaboration  online  tools  brainstorming  whiteboard 
november 2012
Visualize Data - Data Resources - Subject and Class Guides at University of Washington Libraries
visualization  UW  tools  data  datamining 
november 2012
Genome-wide association between DNA methylation and alternative splicing in an invertebrate
methylation  epigenetic  invertebrate  splicing  paper  rna-seq  bee 
november 2012
FISH 507H Beautiful Graphics in R
R  graphics  branch  visualization  teaching 
october 2012
A molecular perspecive: biology of the emerging pathogen Batrachochytrium dendrobatidis
pathogen  paper  molecular  genome  genomics  genetics  chytrid 
october 2012
Public Galaxy Servers - Galaxy Wiki
galaxy  bioinformatics  software  ngs 
october 2012
JANE Journal / Author Name Estimator
bibliographic  author  tools 
september 2012
Using your Mac for Seq analysis Updated thread 'Hello - I use to think I was good with a computer'
macosx  bioinformatics  software  commandline  terminal  perl  unix 
september 2012
Genetics of gene expression responses to temperature stress in a sea urchin gene network - RUNCIE - 2012 - Molecular Ecology - Wiley Online Library
paper  network  rna-seq  urchin  stress  temperature 
september 2012
The Simple Fool’s Guide to Population Genomics via RNA­Seq: An Introduction to High­Throughput Sequencing Data Analysis
bioinformatics  rna-seq  assembly  genomics  software  commandline  workflow 
september 2012
CBrowse
software  rna-seq  assembly  viewer  bioinformatics  visualization 
september 2012
Galaxy | Published Page | Galaxy RNA-seq Analysis Exercise
rna-seq  software  galaxy  bioinformatics 
september 2012
Visually weighted regression in R (à la Solomon Hsiang)
visualization  statistics  code  R 
september 2012
GFOLD
software  bioinformatics  rna-seq  commandline 
september 2012
Schatz Laboratory - Teaching
teaching  software  bioinformatics  visualization  links  lecture  R 
september 2012
The Evolution of Invertebrate Gene Body Methylation
paper  epigenetic  methylation  invertebrate  evolution 
september 2012
Downloading Viewing Chromatograms
software  bioinformatics 
september 2012
The Aquificales Data Warehouse
bioinformatics  software  scripts  blast  assembly  workflow  data  microbe 
august 2012
OrthoMCL Database Home
bioinformatics  ortholog  protein  phylogenetic  blast  database 
july 2012
Phage Databases
phage  database  bio533  bioinformatics 
july 2012
EuPathDB : The Eukaryotic Pathogen genome resource
pathogen  genome  bio533  database  eukaryotic  bioinformatics 
july 2012
Getting Genetics Done: Identifying Pathogens in Sequencing Data
pathogen  ngs  bio533  bioinformatics 
july 2012
Unix and Perl Primer for Biologists
unix  perl  terminal  bioinformatics  primer 
july 2012
miROrtho: the catalogue of animal microRNA genes | cegg.unige.ch Computational Evolutionary Genomics Group
mirna  microRNA  database 
july 2012
Evidence for an epigenetic role in inbreeding depression
paper  inbreeding  hybrid  methylation  epigenetic 
july 2012
Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data
paper  snp  epigenetic  methylation  software  bioinformatics  bisulfite 
july 2012
Frontiers | The Antimicrobial Defense of the Pacific Oyster, Crassostrea gigas. How Diversity may Compensate for Scarcity in the Regulation of Resident/Pathogenic Microflora | Frontiers in Antimicrobials, Resistance and Chemotherapy
antimicrobial  paper  bio533  oyster  defensin  bacteria 
july 2012
Data Wrangler
analysis  data  visualization  tools  tab  text  software  conversion  bioinformatics 
july 2012
Xpression RNAseq Analysis
bioinformatics  software  rna-seq  ngs 
july 2012
Sandvox Website creation for Mac that's as easy to use as the Mac
html  editor  osx  mac  software 
july 2012
Widespread dynamic DNA methylation in response to biotic stress
methylation  epigenetic  stress  environment  paper  immune  siRNA 
june 2012
Signature miRNAs Involved in the Innate Immunity of Invertebrates
mirna  epigenetic  invertebrate  immune  innate  shrimp  paper 
june 2012
How many Apple IDs should your family have? — Apple News, Tips and Reviews
mobileme  appleid  account  user  apple 
june 2012
PLoS Genetics: DNA Methylation of the Gonadal Aromatase (cyp19a) Promoter Is Involved in Temperature-Dependent Sex Ratio Shifts in the European Sea Bass
paper  methylation  aromatase  temperature  sex  bass 
june 2012
Jack of all nectars, master of most: DNA methylation and the epigenetic basis of niche width in a flower-living yeast
methylation  epigenetic  population  niche  nectar  environment  paper 
june 2012
Fast and sensitive mapping of bisulfite-treated sequencing data
bisulfite  paper  mapping  methylation  software  bioinformatics 
may 2012
Datavisualization.ch Selected Tools
visualization  tools  data  fish546 
may 2012
Environmentally Induced Epigenetic Transgenerational Inheritance of Ovarian Disease
paper  methylation  epigenetic  heredity  pesticide  hydrocarbon  ovarian  plastic  environment 
may 2012
RSS Feeds Directory for Twitter, Facebook, YouTube, etc.
RSS  feeds 
may 2012
Transposable Elements tools @  Bergman Lab
tools  bioinformatics  transposable  TE  software  fish546 
may 2012
Data and visualization blogs worth following
data  visualization 
april 2012
Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing
methylation  sequencing  bisulfite  pacbio  technique  merv  paper 
april 2012
Network Analysis of Oyster Transcriptome Revealed a Cascade of Cellular Responses during Recovery after Heat Shock
paper  network  oyster  crassostrea  microarray  R  visualization 
april 2012
Methods for visual mining of genomic and proteomic data atlases
paper  visualization  proteomic  protein-interactions  genomics 
april 2012
A proteomics approach reveals divergent molecular responses to salinity in populations of European whitefish (Coregonus lavaretus) - PAPAKOSTAS - 2012 - Molecular Ecology - Wiley Online Library
paper  proteomic  ms  salinity 
april 2012
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era
paper  motif  bioinformatics  fish546 
april 2012
Epigenome-Wide Scans Identify Differentially Methylated Regions for Age and Age-Related Phenotypes in a Healthy Ageing Population
aging  senescence  methylation  epigenetic  paper  heredity 
april 2012
All My Tweets - View all your tweets on one page.
twitter  tools 
april 2012
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
paper  ngs  software  assembly  commandline  bioinformatics  fish546 
april 2012
Galaxy @ Tubingen
galaxy  gff  genbank  converter  bioinformatics 
april 2012
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