1272
CiteULike: A cautionary note on using binary calls for analysis of DNA methylation
Bookmarked: A cautionary note on using binary calls for analysis of DNA methylation
from twitter_favs
3 days ago
Whole genome comparative analysis of transposable elements provides... - PubMed - NCBI
Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their…
from twitter_favs
13 days ago
Non destructive sampling of Olympia oyster larvae - YouTube
I added a video to a playlist Non destructive sampling of Olympia oyster larvae
from twitter_favs
14 days ago
Epigenetic control of intestinal barrier function and inflammation in zebrafish
RT : Host epigenetic mechanisms interact with microbiota to control gut barrier function & inflammation in the zebrafish:
from twitter_favs
20 days ago
bionode
looks pretty cool.

# Download all bacteria gff files
$ bionode-ncbi download gff bacteria
from twitter_favs
4 weeks ago
(500) https://try.jupyter.org/
Try out jupyterhub at which will give you full python stack, julia or R notebooks.
from twitter_favs
5 weeks ago
Ctrl alt share : Scientific Data
RT : Archive and cite code in your SciData paper, with DOI-issuing repositories
from twitter_favs
5 weeks ago
Running MAKER Genome Annotation on STARCLUSTER | Electric Fish Lab @ MSU
Check out my tutorial on how to annotate a eukaryotic genome using MPI in the cloud
from twitter_favs
6 weeks ago
Marwick_Open_Access_Presentation_SEC - Google Slides
Slides from our presentation today to Senate Executive Cmte, making easier for faculty:
openaccess  from twitter_favs
6 weeks ago
PLOS Genetics: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
cool! Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
from twitter_favs
7 weeks ago
Things in pandas
Things in pandas I (, that is) wish I had known earlier
pydata  pandas  ipython  notebook  from twitter_favs
7 weeks ago
Quantitative visualization of alternative exon expression from RNA-seq data
Quantitative visualization of alternative exon expression from RNA-seq data
from twitter_favs
7 weeks ago
yihui/rlp · GitHub
Literate Programming for developing R packages with rmarkdown by
reproducible  rstats  from twitter_favs
12 weeks ago
Software Carpentry: All I Want for Christmas is a Pull Request...
All I Want for Christmas is a Pull Request: take a look at the beta of our refactored lessons (and lend a hand)
from twitter_favs
december 2014
torognes/vsearch · GitHub
Every bioinformatician should be REALLY EXCITED about this: . USEARCH but open source, 64bit. No more slow BLAST
from twitter_favs
november 2014
Title
I'd love any thoughts on my early draft of "Repeatable Workflows with
Docker and IPython Notebooks" preso.
from twitter_favs
november 2014
What is open science? | Discussions – F1000 Research
RT : Rounding up our series of blog posts about , a primer on open notebook science, citizen science, and more
openscience  from twitter_favs
november 2014
CRAN - Package rPlant
rPlant - R interface to the iPlant Discovery Environment
RStats  from twitter_favs
november 2014
Database Information
. toppgene looks like a winner! At least GO is updated within the last 3 months! Thanks!
from twitter_favs
october 2014
Who's Afraid of Open Peer Review? - PeerJ Blog
Who's Afraid of Open Peer Review - Read all about the adoption & benefits of optional open peer review at
from twitter_favs
october 2014
Untitled (https://peerj.com/preprints/549/)
New PrePrint: "The Tao of Open Science for Ecology"
from twitter_favs
october 2014
The RIDL hypothesis: transposable elements as functional... [RNA. 2014] - PubMed - NCBI
Reading this paper that proposes as functional domains for lncRNAs (since lncRNAs are full of TEs)
transposons  from twitter_favs
october 2014
Starting data analysis/wrangling with R: Things I wish I'd been told
Starting data analysis/wrangling with R: Things I wish I'd been told -
from twitter_favs
october 2014
Working with RStudio, Git, GitHub
Great detailed instructions & pointers for working w RStudio, Git & GitHub from
from twitter_favs
october 2014
Within- and Between-Litter Maternal Care Alte... [Behav Neurosci. 2014] - PubMed - NCBI
A mother's love: new study shows significantly higher methylation in rat pups exposed to more licking & grooming
DNA  from twitter_favs
october 2014
Building a community - how? (with tweets) · ctitusbrown · Storify
Now I can be more specific - what's low-maint way to build & maintain a community presence for academics? See
from twitter_favs
october 2014
Pelsue Lab | The Laboratory of Stephen C. Pelsue, Ph.D.
Pelsue Lab site () coming together. Structure set up and some content. We are very excited. Thx
from twitter_favs
september 2014
Untitled (http://arxiv.org/pdf/1409.0798v1.pdf)
Interesting read: Datahub - a proposed dataset version control system in the same ilk as git and :
from twitter_favs
september 2014
Advanced NCBI
I gave a talk titled "Advanced NCBI" at this morning. I think I killed my students.
from twitter_favs
september 2014
Pipes and Filters
Unix pipes and filters beautifully explained by |
from twitter_favs
september 2014
eTBLAST 3.0
eTBLAST: a text-similarity based search engine
bioinformatics  biology  search  text  database  citations  journal  finder 
september 2014
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