1304
tessington/PNASForageFish · GitHub
RT : "Fishing amplifies forage fish population collapses" + & code+data on
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3 days ago
Fishing amplifies forage fish population collapses
RT : "Fishing amplifies forage fish population collapses" + & code+data on
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3 days ago
Untitled (https://peerj.com/articles/970/)
PANDA: pathway and annotation explorer for visualizing and interpreting gene-centric data
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9 days ago
National Data Integrity Conference - Making the web work for science
"Bake reproducible practices into the fabric of research." Great takeaway from 's talk at
dataintegrity15  from twitter_favs
21 days ago
Untitled (http://elifesciences.org/content/4/e05255)
RT : Nordborg lab: "DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation"
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23 days ago
Farmed in the EU - European Commission
Aquaculture: EU is 8th producer in terms of volume, most from Asia
FARMEDintheEU  from twitter_favs
4 weeks ago
Study Group Handbook
Want to start your own Study Group for ? Check out our new guide + web offering:
openscience  from twitter_favs
5 weeks ago
(500) https://marklodato.github.io/visual-git-guide/index-en.html
I struggled just last week learning git/github (100% worth it). Here's the most helpful thing I found:
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5 weeks ago
Introducing Mozilla Science Study Groups | Mozilla Science Lab
Introducing Study Groups, our new project for skills-sharing, discoverability & collaboration in
openscience  from twitter_favs
5 weeks ago
Home · lindenb/xslt-sandbox Wiki · GitHub
[github] NCBI pubmed trending Article as a RSS feed see: ...
tweet  from twitter_favs
5 weeks ago
Self-host a scientific journal with eLife Lens — Medium
How to self-host a scientific journal works on Github pages, 30-second setup, e.g.:
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6 weeks ago
eLife Lens
How to self-host a scientific journal works on Github pages, 30-second setup, e.g.:
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6 weeks ago
jvns/pandas-cookbook · GitHub
Concrete examples for getting started with pandas from Great for next steps after a Python workshop!
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6 weeks ago
Recreating a famous visualisation | opiniomics
Great post on heatmaps by Starts w ugly R defaults & walks through each step
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7 weeks ago
Google Scholar Button - Chrome Web Store
Nice, Google Scholar browser extension for easy access to Google Scholar from any web page:
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7 weeks ago
Rebooting review : Nature Biotechnology : Nature Publishing Group
RT : Nature Biotech taking big step in right direction addressing reproducibility and code availability
bioinformatics  from twitter_favs
7 weeks ago
Making Complex Heatmaps
ok, thanks to for pointing out this nifty package for doing heatmaps with annotations I'll be using it
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8 weeks ago
CiteULike: A cautionary note on using binary calls for analysis of DNA methylation
Bookmarked: A cautionary note on using binary calls for analysis of DNA methylation
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9 weeks ago
Whole genome comparative analysis of transposable elements provides... - PubMed - NCBI
Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their…
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10 weeks ago
Non destructive sampling of Olympia oyster larvae - YouTube
I added a video to a playlist Non destructive sampling of Olympia oyster larvae
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10 weeks ago
Epigenetic control of intestinal barrier function and inflammation in zebrafish
RT : Host epigenetic mechanisms interact with microbiota to control gut barrier function & inflammation in the zebrafish:
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11 weeks ago
bionode
looks pretty cool.

# Download all bacteria gff files
$ bionode-ncbi download gff bacteria
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february 2015
(500) https://try.jupyter.org/
Try out jupyterhub at which will give you full python stack, julia or R notebooks.
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february 2015
Ctrl alt share : Scientific Data
RT : Archive and cite code in your SciData paper, with DOI-issuing repositories
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february 2015
Running MAKER Genome Annotation on STARCLUSTER | Electric Fish Lab @ MSU
Check out my tutorial on how to annotate a eukaryotic genome using MPI in the cloud
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february 2015
Marwick_Open_Access_Presentation_SEC - Google Slides
Slides from our presentation today to Senate Executive Cmte, making easier for faculty:
openaccess  from twitter_favs
february 2015
PLOS Genetics: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
cool! Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
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february 2015
Things in pandas
Things in pandas I (, that is) wish I had known earlier
pydata  pandas  ipython  notebook  from twitter_favs
february 2015
Quantitative visualization of alternative exon expression from RNA-seq data
Quantitative visualization of alternative exon expression from RNA-seq data
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february 2015
yihui/rlp · GitHub
Literate Programming for developing R packages with rmarkdown by
reproducible  rstats  from twitter_favs
december 2014
Software Carpentry: All I Want for Christmas is a Pull Request...
All I Want for Christmas is a Pull Request: take a look at the beta of our refactored lessons (and lend a hand)
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december 2014
torognes/vsearch · GitHub
Every bioinformatician should be REALLY EXCITED about this: . USEARCH but open source, 64bit. No more slow BLAST
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november 2014
Title
I'd love any thoughts on my early draft of "Repeatable Workflows with
Docker and IPython Notebooks" preso.
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november 2014
What is open science? | Discussions – F1000 Research
RT : Rounding up our series of blog posts about , a primer on open notebook science, citizen science, and more
openscience  from twitter_favs
november 2014
CRAN - Package rPlant
rPlant - R interface to the iPlant Discovery Environment
RStats  from twitter_favs
november 2014
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