1236
torognes/vsearch · GitHub
Every bioinformatician should be REALLY EXCITED about this: . USEARCH but open source, 64bit. No more slow BLAST
from twitter_favs
20 days ago
Title
I'd love any thoughts on my early draft of "Repeatable Workflows with
Docker and IPython Notebooks" preso.
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4 weeks ago
What is open science? | Discussions – F1000 Research
RT : Rounding up our series of blog posts about , a primer on open notebook science, citizen science, and more
openscience  from twitter_favs
5 weeks ago
CRAN - Package rPlant
rPlant - R interface to the iPlant Discovery Environment
RStats  from twitter_favs
6 weeks ago
Database Information
. toppgene looks like a winner! At least GO is updated within the last 3 months! Thanks!
from twitter_favs
7 weeks ago
Who's Afraid of Open Peer Review? - PeerJ Blog
Who's Afraid of Open Peer Review - Read all about the adoption & benefits of optional open peer review at
from twitter_favs
8 weeks ago
Untitled (https://peerj.com/preprints/549/)
New PrePrint: "The Tao of Open Science for Ecology"
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8 weeks ago
The RIDL hypothesis: transposable elements as functional... [RNA. 2014] - PubMed - NCBI
Reading this paper that proposes as functional domains for lncRNAs (since lncRNAs are full of TEs)
transposons  from twitter_favs
9 weeks ago
Starting data analysis/wrangling with R: Things I wish I'd been told
Starting data analysis/wrangling with R: Things I wish I'd been told -
from twitter_favs
9 weeks ago
Working with RStudio, Git, GitHub
Great detailed instructions & pointers for working w RStudio, Git & GitHub from
from twitter_favs
10 weeks ago
Within- and Between-Litter Maternal Care Alte... [Behav Neurosci. 2014] - PubMed - NCBI
A mother's love: new study shows significantly higher methylation in rat pups exposed to more licking & grooming
DNA  from twitter_favs
10 weeks ago
Building a community - how? (with tweets) · ctitusbrown · Storify
Now I can be more specific - what's low-maint way to build & maintain a community presence for academics? See
from twitter_favs
11 weeks ago
Pelsue Lab | The Laboratory of Stephen C. Pelsue, Ph.D.
Pelsue Lab site () coming together. Structure set up and some content. We are very excited. Thx
from twitter_favs
12 weeks ago
Untitled (http://arxiv.org/pdf/1409.0798v1.pdf)
Interesting read: Datahub - a proposed dataset version control system in the same ilk as git and :
from twitter_favs
12 weeks ago
Advanced NCBI
I gave a talk titled "Advanced NCBI" at this morning. I think I killed my students.
from twitter_favs
12 weeks ago
Pipes and Filters
Unix pipes and filters beautifully explained by |
from twitter_favs
september 2014
eTBLAST 3.0
eTBLAST: a text-similarity based search engine
bioinformatics  biology  search  text  database  citations  journal  finder 
september 2014
Is lecturing ethical? (with tweets) · mwilsonsayres · Storify
Is lecturing ethical? Storify of Scott Freeman's interactive seminar:
from twitter_favs
september 2014
Teaching Materials | LANGMEAD LAB @ JHU
People teaching bioinformatics to CS audience: you NEED to see this awesome resource from @BenLangmead
bioinformatics  slides  teaching 
september 2014
Untitled (http://journal.frontiersin.org/Journal/10.3389/fgene.2014.00324/abstract)
Nice overview from : Statistical methods for detecting differentially methylated loci and regions
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september 2014
Performing exploratory analysis in Python (using Pandas)
Performing exploratory analysis in Python (using Pandas) -
from twitter_favs
august 2014
Git tutorial
Several of my colleagues pledged they'd finally start using git and after I gave this intro tutorial today
from twitter_favs
august 2014
(401) http://www.nature.com/nrg/journal/vaop/ncurrent/full/nrg3772.html
Advances in the profiling of DNA modifications: cytosine methylation and beyond
from twitter_favs
august 2014
(401) http://www.nature.com/nrg/journal/vaop/ncurrent/full/nrg3819.html
Pathogen genetics: Exploring gene function and parasite-host protein interactions
from twitter_favs
august 2014
Top 5 bash commands for handling data – Code, Think, Write
New on the blog: Bioinformaticians gotta love bash. My top 5 commands line tricks for handling data
datascience  data  bash  terminal  commads  commandline  from twitter_favs
august 2014
(500) http://journal.frontiersin.org/Journal/10.3389/fgene.2014.00293/abstract
A bioinformatics workflow for detecting signatures of selection in genomic data: Murray Cadzo...
genetics  genes  from twitter_favs
august 2014
Untitled (http://genomebiology.com/content/pdf/s13059-014-0408-0.pdf)
RT : In the end, seems that nobody knows what´s happening with methylation in gene bodies...
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august 2014
Making Your Code Citable · GitHub Guides
Making your code citeable - a tutorial explaining how to cite GitHub repositories in academic literature via DOI
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august 2014
Finding nodes in Anopheles gambiae pathways with IUPAC names | chem-bla-ics
Egon Willighagen: Finding nodes in Anopheles gambiae pathways with IUPAC names
from twitter_favs
august 2014
Hang0ut - Faster access to Google Hangouts
Unsure why G+ makes it so cumbersome to start a video chat. This helps:
from twitter_favs
august 2014
Twitter / SolomonRDavid: Jasonowicz: Alaskan & W.Coast ...
RT : Jasonowicz: Alaskan & W.Coast pop genetics VERY similar across large geographic range.
sablefish  AFS14  from twitter_favs
august 2014
runemadsen/ipython-notebox · GitHub
iPython Notebook Vagrant Box - A simple skeleton for easily running iPython Notebooks on a local machine:
from twitter_favs
august 2014
Untitled (http://www.washacad.org/about/news/Press_releases/wsas_PR_2014_New_members_7_18_14.pdf)
RT : Affiliate Robin Waples and our fearless director Andre Punt () both elected to WA State Academy of Sciences
from twitter_favs
august 2014
Ecology of Infectious Marine Diseases [course]
RT : Really impressed with the open notebooks being kept by 's students as a matter of course
openscience  from twitter_favs
august 2014
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