1433
Twitter
"Share Impressively": Slides + thoughts from my talk on reproducibility. Comments welcome!
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17 days ago
Slides and some thoughts on a talk about reproducibility - rOpenSci Discuss
"Share Impressively": Slides + thoughts from my talk on reproducibility. Comments welcome!
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17 days ago
(500) http://www.nature.com/nature/journal/vaop/ncurrent/full/nature16547.html
Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions
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21 days ago
Twitter
QuickRNASeq RNA-seq data analysis automation + interactive visualization
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4 weeks ago
timdavies/trunk · GitHub
Trunk is a simple, web-based notes app that stores notes as Markdown and can be self-hosted
opensource  from twitter_favs
6 weeks ago
Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences - F1000Research
Looking fwd to reading! Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences
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6 weeks ago
Mobile DNA | Full text | Transposable element detection from whole genome sequence data
Nice review by Ewing on “Transposable element detection from whole genome sequence data” ()
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6 weeks ago
What’s in a journal name? : Nature News & Comment
Would deleting journal names from publication lists encourage papers to be judged on merit?
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8 weeks ago
Twitter
Would deleting journal names from publication lists encourage papers to be judged on merit?
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8 weeks ago
Researchers embrace and reap benefits of Electronic Lab Notebooks
Researchers @ UW-Madison embrace and reap benefits of Electronic Lab Notebooks via
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october 2015
binder
Convert a GitHub repo of Jupyter notebooks into an executable environment:
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october 2015
New RNA-Seq Methods and Alorithms (2015 iPlant Workshop @ UC Davis) - YouTube
Check out video of new RNA-seq methods and algorithms from an iPlant workshop with :
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october 2015
Introduction | 'Working Open' Project Guide
“Working Open” guide (work in progress). Workshopping next week; contributions encouraged!.
openscience  COASP  from twitter_favs
september 2015
Why I'm sceptical about the idea of genetically inherited trauma | Science | The Guardian
I explain my skepticism for trans-generational epigenetics and genetics/enviroment in this piece
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september 2015
2015 Symposium | Ecological Genomics | Kansas State University
Don't miss out on early registration for the 13th Annual Ecological Genomics Symposium. Deadline is 9/18.
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september 2015
Habitat Earth in the Classroom - YouTube
Hey teachers! Check out whole channel of “Habitat Earth” clips designed for classroom use!
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september 2015
Hybrid mimics and hybrid vigor in Arabidopsis
PNAS article on Arabidopsis hybrid vigor suggests F1 mods as a culprit -CW
epigenetic  from twitter_favs
august 2015
(503) http://seqanswers.com/forums/showthread.php?t=61936
"Why are the first few bases of Illumina HiSeq reads of lower quality?"
seqanswers  from twitter_favs
august 2015
About
Miller is like sed, awk, cut, join, and sort for name-indexed data such as CSV
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august 2015
Galaxy Integrated Omics: Web-based standards-compliant workflows for proteomics informed by transcriptomics. - PubMed - NCBI
Galaxy Integrated Omics: Web-based standards-compliant workflows for proteomics informed by transcriptomics
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august 2015
Project everware: Reusable science - Tim Head
everware: reusable science jupyterhub + docker (~ an executable version of nbviewer). seems cool!
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august 2015
Untitled (https://peerj.com/preprints/1287/)
New: "An optimization approach to detect differentially methylated regions from Whole Genome Bisulfite Seq. data"
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august 2015
Applications · iobio
Stunning bioinformatics web applications from the Marth Lab: (OSS, MIT license)
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august 2015
Epigenetics & Chromatin | Full text | The BisPCR
New in Epigenetics & Chromatin: robust, efficient & cost-effective technique for targeted bisulfite NGS! Read more:
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august 2015
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