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PLOS ONE: Fast Principal Component Analysis of Large-Scale Genome-Wide Data
PLOS ONE: Fast Principal Component Analysis of Large-Scale Genome-Wide Data
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10 days ago
zulily/ipy_alerts · GitHub
Ever wished IPython would email you when a long-running operation has completed? has you covered.
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15 days ago
NBDiff
A diffing and merging tool for notebook
IPython  from twitter_favs
20 days ago
PLOS Biology: Troubleshooting Public Data Archiving: Suggestions to Increase Participation
New paper makes sensible suggestions to increase archiving of public data. Encourage individuals and group benefit.
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5 weeks ago
Continuous Publishing
New blog post: Continuous Publishing continuous integration for science, quotes by , ,
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6 weeks ago
jsvine/reporter · GitHub
reporter - Literate data analysis with iPython notebooks and Jekyll.
ruby  from twitter_favs
8 weeks ago
Untitled (http://ropensci.org/plotly.html)
The R interface to plotly (interactive data visualization) is now part of the suite.

rstats  ropensci  from twitter_favs
8 weeks ago
CoreGenomics: Everything you need to kow about NGS library prep...almost
. should print this out for everyone! RT : Everything you need to know about NGS library prep
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9 weeks ago
A gallery of interesting IPython Notebooks · ipython/ipython Wiki · GitHub
congrats!! Is now a good time to link it at the gallery, or do you want to wait for final publication?
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10 weeks ago
Coming up this week on our community call … (February 13, 11 ET) | Mozilla Science Lab
Join us this Thurs for our call to hear a/b crowdfunding, sharing large datasets + open source tools:
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10 weeks ago
Figshare
Intraspecific variation in condition of reef-building with differential levels of disturbance:
physiological  corals  from twitter_favs
10 weeks ago
Basic Statistics Calculator
Need to calculate some basic statistics quickly - like mean, median, variance, std error? Here is a simple webapp:
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10 weeks ago
Oyster Farming Gets Revolutionized on the Gulf Coast
Great coverage of our friend Bill Walton: Oyster Farming Gets Revolutionized on the Gulf Coast via
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10 weeks ago
Epigenetic modification and inheritance in sexual reversal of fish
Sole sister/sole brother Epigenetic inheritance of sexual reversal in tongue sole fish
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11 weeks ago
Untitled (http://often.io/#/)
Code You Use: An open source project to keep snippets and other code stuff.
Built with MEAN.
repository : htt...
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11 weeks ago
kingofthejaffacakes comments on What is the big deal about IPython Notebooks?
RT : "Code and data or it didn't happen", new motto for repro. research. From a discussion about and
OpenScience  IPython  from twitter_favs
12 weeks ago
Figshare
with Rmarkdown: data management, analysis and reporting all-in-one
Research  Reproducible  from twitter_favs
12 weeks ago
How scientific figures should work in 2014
Analysis and figures updating in real time on the web. This is what the future looks like by via
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12 weeks ago
IPython: A unified environment for interactive data analysis - Data
new post for => IPython: A unified environment for interactive data analysis
strataconf  from twitter_favs
january 2014
Next-generation sequence assembly: four sta... [PLoS Comput Biol. 2013] - PubMed - NCBI
“Next-generation sequence assembly: four stages of data processing and computational challenges.”
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january 2014
PLOS Biology: Best Practices for Scientific Computing
Best Practices for Scientific Computing - finally getting attention it deserves (v )
openscience  from twitter_favs
january 2014
brentp/bwa-meth · GitHub
wrote a bs-seq aligner based on bwa mem. it works pretty well:
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january 2014
PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution
PennSeq: accurate isoform-specific gene exp. quantification in RNA-Seq by modeling non-uniform read distribution
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december 2013
iPfam: a database of protein family and do... [Nucleic Acids Res. 2013] - PubMed - NCBI
“iPfam: a database of protein family and domain interactions found in the Protein Data Bank.”
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december 2013
harelba/q · GitHub
Use SQL commands on tab-delimited data.
q - Treating Text as a Database
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november 2013
PLOS ONE: Reactive Oxygen Species in Unstimulated Hemocytes of the Pacific Oyster Crassostrea gigas: A Mitochondrial Involvement
Reactive Oxygen Species in Unstimulated Hemocytes of the Pacific Oyster Crassostrea gigas: A Mitochondrial Invol...
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november 2013
Untitled (http://www.nature.com/spoton/wp-content/uploads/2013/11/SpotOn-Final-Prog.pdf)
Today is How can you join in you may ask? Click onto the session you want to watch & the video will appear
solo13  from twitter_favs
november 2013
Untitled (http://hilpisch.com/CAE_Pycon_DE_Interactive_Analytics.html)
My slides for the talk "Interactive Data Analytics and Visualization with Python" - -
Python  from twitter_favs
october 2013
BMC Bioinformatics | Abstract | afterParty: turning raw transcriptomes into permanent resources
New software: afterParty - turning transcriptomes into permanent resources . Assembly pre-party needed w/ ILMN data
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october 2013
Sage: Open Source Mathematics Software: IPython Notebooks in the Cloud with Realtime Synchronization and Support for Collaborators
IPython Notebooks in the Cloud with Realtime Synchronization and Support for Collaborators: Sage's W. Stein latest:
from twitter_favs
september 2013
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