nhaliday + model-organism   45

Becoming a Man - Quillette
written by William Buckner

“In the puberty rites, the novices are made aware of the sacred value of food and assume the adult condition; that is, they no longer depend on their mothers and on the labor of others for nourishment. Initiation, then, is equivalent to a revelation of the sacred, of death, sexuality, and the struggle for food. Only after having acquired these dimensions of human existence does one become truly a man.” – Mircea Eliade, Rites and Symbols of Initiation: The Mysteries of Birth and Rebirth, 1958

“To be a man in most of the societies we have looked at, one must impregnate women, protect dependents from danger, and provision kith and kin.” – David D. Gilmore, Manhood in the Making, 1990

“Keep your head clear and know how to suffer like a man.” – Ernest Hemingway, The Old Man and the Sea, 1952

There are commonalities of human behavior that extend beyond any geographic or cultural boundary. Every known society has a sexual division of labor – many facets of which are ubiquitous the world over. Some activities are universally considered to be primarily, or exclusively, the responsibility of men, such as hunting large mammals, metalworking, and warfare. Other activities, such as caregiving, cooking, and preparing vegetable foods, are nearly always considered primarily the responsibility of women.


Across vastly different societies, with very dissimilar political systems, it is often similar sets of skills that are considered desirable for their (predominately male) leaders. A man can gain status through displays of key talents; through his ability to persuade; by developing and maintaining important social relationships; and by solving difficult problems. In his classic paper on the political systems of ‘egalitarian’ small-scale societies, anthropologist Christopher Boehm writes, “a good leader seems to be generous, brave in combat, wise in making subsistence or military decisions, apt at resolving intragroup conflicts, a good speaker, fair, impartial, tactful, reliable, and morally upright.” In his study on the Mardu hunter-gatherers of Australia, anthropologist Robert Tonkinson wrote that the highest status was given to the “cooks,” which is the title given to “the older men who prepare the many different ceremonial feasts, act as advisors and directors of most rituals (and perform the most important “big” dances), and are guardians of the caches of sacred objects.”

Anthropologist Paul Roscoe writes that some of the important skills of ‘Big Men’ in New Guinea horticulturist societies are, “courage and proficiency in war or hunting; talented oratory; ability in mediation and organization; a gift for singing, dancing, wood carving, and/or graphic artistry; the ability to transact pigs and wealth; ritual expertise; and so on.” In the volume Cooperation and Collective Action (2012), Roscoe notes further that the traits that distinguish a ‘Big Man’ are “his skills in…conflict resolution; his charisma, diplomacy, ability to plan, industriousness, and intelligence” and “his abilities in political manipulation.” In their paper on ‘The Big Man Mechanism,’ anthropologist Joseph Henrich and his colleagues describe the common pathways to status found across cultures, noting that, “In small-scale societies, the domains associated with prestige include hunting, oratory, shamanic knowledge and combat.”


In his book How Can I Get Through To You? (2002), author Terrence Real describes visiting a remote village of Maasai pastoralists in Tanzania. Real asked the village elders (all male) what makes a good warrior and a good man. After a vibrant discussion, one of the oldest males stood up and told Real;

I refuse to tell you what makes a good morani [warrior]. But I will tell you what makes a great morani. When the moment calls for fierceness a good morani is very ferocious. And when the moment calls for kindness, a good morani is utterly tender. Now, what makes a great morani is knowing which moment is which! (Real, 64)

This quote is also favorably cited by feminist author bell hooks in her book The Will to Change (2004). While hooks and Real offer perspectives quite different from my approach here, the words of the Massai elder illustrate an ideal conception of masculinity that may appeal to many people of diverse ideologies and cultural backgrounds. A great warrior, a great man, is discerning – not needlessly hostile nor chronically deferential, he instead recognizes the responsibilities of both defending, and caring for, his friends and family.


As anthropologist David G. Gilmore notes in Manhood in the Making, exhortations such as “be a man” are common across societies throughout the world. Such remarks represent the recognition that being a man came with a set of duties and responsibilities. If men failed to stay cool under pressure in the midst of hunting or warfare, and thus failed to provide for, or protect, their families and allies, this would have been devastating to their societies.

Throughout our evolutionary history, the cultures that had a sexual division of labor, and socialized males to help provide for and protect the group, would have had a better chance at survival, and would have outcompeted those societies that failed to instill such values.

Some would argue, quite reasonably, that in contemporary, industrialized, democratic societies, values associated with hunting and warfare are outmoded. Gilmore writes that, “So long as there are battles to be fought, wars to be won, heights to be scaled, hard work to be done, some of us will have to “act like men.”” Yet the challenges of modern societies for most people are often very different from those that occurred throughout much of our history.

Still, some common components of the traditional, idealized masculine identity I describe here may continue to be useful in the modern era, such as providing essential resources for the next generation of children, solving social conflicts, cultivating useful, practical skills, and obtaining socially valuable knowledge. Obviously, these traits are not, and need not be, restricted to men. But when it comes to teaching the next generation of young males what socially responsible masculinity looks like, it might be worth keeping these historical contributions in mind. Not as a standard that one should necessarily feel unduly pressured by, but as a set of productive goals and aspirations that can aid in personal development and social enrichment.

The Behavioral Ecology of Male Violence: http://quillette.com/2018/02/24/behavioral-ecology-male-violence/

“Aggressive competition for access to mates is much
more beneficial for human males than for females…”
~Georgiev et al. 1


To understand why this pattern is so consistent across a wide variety of culturally and geographically diverse societies, we need to start by looking at sex differences in reproductive biology.

Biologically, individuals that produce small, relatively mobile gametes (sex cells), such as sperm or pollen, are defined as male, while individuals that produce larger, less mobile gametes, such as eggs or ovules, are defined as female. Consequently, males tend to have more variance in reproductive success than females, and a greater potential reproductive output. Emperor of Morocco, Moulay Ismael the Bloodthirsty (1672–1727) was estimated to have fathered 1171 children from 500 women over the course of 32 years,6 while the maximum recorded number of offspring for a woman is 69, attributed to an unnamed 18th century Russian woman married to a man named Feodor Vassilyev.


Across a wide variety of taxa, the sex that produces smaller, mobile gametes tends to invest less in parental care than the sex that produces larger, less mobile gametes. For over 90 percent of mammalian species, male investment in their offspring ends at conception, and they provide no parental care thereafter.7 A male mammal can often increase his reproductive success by seeking to maximize mating opportunities with females, and engaging in violent competition with rival males to do so. From a fitness perspective, it may be wasteful for a male to provide parental care, as it limits his reproductive output by reducing the time and energy he spends competing for mates.
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april 2018 by nhaliday
The Hanson-Yudkowsky AI-Foom Debate - Machine Intelligence Research Institute
How Deviant Recent AI Progress Lumpiness?: http://www.overcomingbias.com/2018/03/how-deviant-recent-ai-progress-lumpiness.html
I seem to disagree with most people working on artificial intelligence (AI) risk. While with them I expect rapid change once AI is powerful enough to replace most all human workers, I expect this change to be spread across the world, not concentrated in one main localized AI system. The efforts of AI risk folks to design AI systems whose values won’t drift might stop global AI value drift if there is just one main AI system. But doing so in a world of many AI systems at similar abilities levels requires strong global governance of AI systems, which is a tall order anytime soon. Their continued focus on preventing single system drift suggests that they expect a single main AI system.

The main reason that I understand to expect relatively local AI progress is if AI progress is unusually lumpy, i.e., arriving in unusually fewer larger packages rather than in the usual many smaller packages. If one AI team finds a big lump, it might jump way ahead of the other teams.

However, we have a vast literature on the lumpiness of research and innovation more generally, which clearly says that usually most of the value in innovation is found in many small innovations. We have also so far seen this in computer science (CS) and AI. Even if there have been historical examples where much value was found in particular big innovations, such as nuclear weapons or the origin of humans.

Apparently many people associated with AI risk, including the star machine learning (ML) researchers that they often idolize, find it intuitively plausible that AI and ML progress is exceptionally lumpy. Such researchers often say, “My project is ‘huge’, and will soon do it all!” A decade ago my ex-co-blogger Eliezer Yudkowsky and I argued here on this blog about our differing estimates of AI progress lumpiness. He recently offered Alpha Go Zero as evidence of AI lumpiness:


In this post, let me give another example (beyond two big lumps in a row) of what could change my mind. I offer a clear observable indicator, for which data should have available now: deviant citation lumpiness in recent ML research. One standard measure of research impact is citations; bigger lumpier developments gain more citations that smaller ones. And it turns out that the lumpiness of citations is remarkably constant across research fields! See this March 3 paper in Science:

I Still Don’t Get Foom: http://www.overcomingbias.com/2014/07/30855.html
All of which makes it look like I’m the one with the problem; everyone else gets it. Even so, I’m gonna try to explain my problem again, in the hope that someone can explain where I’m going wrong. Here goes.

“Intelligence” just means an ability to do mental/calculation tasks, averaged over many tasks. I’ve always found it plausible that machines will continue to do more kinds of mental tasks better, and eventually be better at pretty much all of them. But what I’ve found it hard to accept is a “local explosion.” This is where a single machine, built by a single project using only a tiny fraction of world resources, goes in a short time (e.g., weeks) from being so weak that it is usually beat by a single human with the usual tools, to so powerful that it easily takes over the entire world. Yes, smarter machines may greatly increase overall economic growth rates, and yes such growth may be uneven. But this degree of unevenness seems implausibly extreme. Let me explain.

If we count by economic value, humans now do most of the mental tasks worth doing. Evolution has given us a brain chock-full of useful well-honed modules. And the fact that most mental tasks require the use of many modules is enough to explain why some of us are smarter than others. (There’d be a common “g” factor in task performance even with independent module variation.) Our modules aren’t that different from those of other primates, but because ours are different enough to allow lots of cultural transmission of innovation, we’ve out-competed other primates handily.

We’ve had computers for over seventy years, and have slowly build up libraries of software modules for them. Like brains, computers do mental tasks by combining modules. An important mental task is software innovation: improving these modules, adding new ones, and finding new ways to combine them. Ideas for new modules are sometimes inspired by the modules we see in our brains. When an innovation team finds an improvement, they usually sell access to it, which gives them resources for new projects, and lets others take advantage of their innovation.


In Bostrom’s graph above the line for an initially small project and system has a much higher slope, which means that it becomes in a short time vastly better at software innovation. Better than the entire rest of the world put together. And my key question is: how could it plausibly do that? Since the rest of the world is already trying the best it can to usefully innovate, and to abstract to promote such innovation, what exactly gives one small project such a huge advantage to let it innovate so much faster?


In fact, most software innovation seems to be driven by hardware advances, instead of innovator creativity. Apparently, good ideas are available but must usually wait until hardware is cheap enough to support them.

Yes, sometimes architectural choices have wider impacts. But I was an artificial intelligence researcher for nine years, ending twenty years ago, and I never saw an architecture choice make a huge difference, relative to other reasonable architecture choices. For most big systems, overall architecture matters a lot less than getting lots of detail right. Researchers have long wandered the space of architectures, mostly rediscovering variations on what others found before.

Some hope that a small project could be much better at innovation because it specializes in that topic, and much better understands new theoretical insights into the basic nature of innovation or intelligence. But I don’t think those are actually topics where one can usefully specialize much, or where we’ll find much useful new theory. To be much better at learning, the project would instead have to be much better at hundreds of specific kinds of learning. Which is very hard to do in a small project.

What does Bostrom say? Alas, not much. He distinguishes several advantages of digital over human minds, but all software shares those advantages. Bostrom also distinguishes five paths: better software, brain emulation (i.e., ems), biological enhancement of humans, brain-computer interfaces, and better human organizations. He doesn’t think interfaces would work, and sees organizations and better biology as only playing supporting roles.


Similarly, while you might imagine someday standing in awe in front of a super intelligence that embodies all the power of a new age, superintelligence just isn’t the sort of thing that one project could invent. As “intelligence” is just the name we give to being better at many mental tasks by using many good mental modules, there’s no one place to improve it. So I can’t see a plausible way one project could increase its intelligence vastly faster than could the rest of the world.

Takeoff speeds: https://sideways-view.com/2018/02/24/takeoff-speeds/
Futurists have argued for years about whether the development of AGI will look more like a breakthrough within a small group (“fast takeoff”), or a continuous acceleration distributed across the broader economy or a large firm (“slow takeoff”).

I currently think a slow takeoff is significantly more likely. This post explains some of my reasoning and why I think it matters. Mostly the post lists arguments I often hear for a fast takeoff and explains why I don’t find them compelling.

(Note: this is not a post about whether an intelligence explosion will occur. That seems very likely to me. Quantitatively I expect it to go along these lines. So e.g. while I disagree with many of the claims and assumptions in Intelligence Explosion Microeconomics, I don’t disagree with the central thesis or with most of the arguments.)
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april 2018 by nhaliday
Eternity in six hours: intergalactic spreading of intelligent life and sharpening the Fermi paradox
We do this by demonstrating that traveling between galaxies – indeed even launching a colonisation project for the entire reachable universe – is a relatively simple task for a star-spanning civilization, requiring modest amounts of energy and resources. We start by demonstrating that humanity itself could likely accomplish such a colonisation project in the foreseeable future, should we want to, and then demonstrate that there are millions of galaxies that could have reached us by now, using similar methods. This results in a considerable sharpening of the Fermi paradox.
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march 2018 by nhaliday
Grown-Ass Dogs Don’t Care About Your Stupid Baby Talk
You know that thing you do where you talk to your dog like it’s a baby? New research shows that puppies respond well to this silly form of speech, but older dogs could give a crap. So, stop doing it when your dog grows up.
news  org:lite  trivia  cocktail  nature  speaking  language  developmental  model-organism  study  summary 
october 2017 by nhaliday
Of mice and men: why animal trial results don’t always translate to humans
It showed that of the most-cited animal studies in prestigious scientific journals, such as Nature and Cell, only 37% were replicated in subsequent human randomised trials and 18% were contradicted in human trials. It is safe to assume that less-cited animal studies in lesser journals would have an even lower strike rate.
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september 2017 by nhaliday
Of Mice and Men | West Hunter
It’s not always easy figuring out how a pathogen causes disease. There is an example in mice for which the solution was very difficult, so difficult that we would probably have failed to discover the cause of a similarly obscure infectious disease in humans.

Mycoplasma pulmonis causes a chronic obstructive lung disease in mice, but it wasn’t easy to show this. The disease was first described in 1915, and by 1940, people began to suspect Mycoplasma pulmonis might be the cause. But then again, maybe not. It was often found in mice that seemed healthy. Pure cultures of this organism did not consistently produce lung disease – which means that it didn’t satisfy Koch’s postulates, in particular postulate 1 (The microorganism must be found in abundance in all organisms suffering from the disease, but should not be found in healthy organisms.) and postulate 3 (The cultured microorganism should cause disease when introduced into a healthy organism.).

Well, those postulates are not logic itself, but rather a useful heuristic. Koch knew that, even if lots of other people don’t.

This respiratory disease of mice is long-lasting, but slow to begin. It can take half a lifetime – a mouse lifetime, that is – and that made finding the cause harder. It required patience, which means I certainly couldn’t have done it.

Here’s how they solved it. You can raise germ-free mice. In the early 1970s, researchers injected various candidate pathogens into different groups of germ-free mice and waited to see which, if any, developed this chronic lung disease. It was Mycoplasma pulmonis , all right, but it had taken 60 years to find out.

It turned out that susceptibility differed between different mouse strains – genetic susceptibility was important. Co-infection with other pathogens affected the course of the disease. Microenvironmental details mattered – mainly ammonia in cages where the bedding wasn’t changed often enough. But it didn’t happen without that mycoplasma, which was a key causal link, something every engineer understands but many MDs don’t.

If there was a similarly obscure infectious disease of humans, say one that involved a fairly common bug found in both the just and the unjust, one that took decades for symptoms to manifest – would we have solved it? Probably not.

Cooties are everywhere.

gay germ search: https://westhunt.wordpress.com/2013/07/21/of-mice-and-men/#comment-15905
It’s hard to say, depends on how complicated the path of causation is. Assuming that I’m even right, of course. Some good autopsy studies might be fruitful – you’d look for microanatomical brain differences, as with nartcolepsy. Differences in gene expression, maybe. You could look for a pathogen – using the digital version of RDA (representational difference analysis), say on discordant twins. Do some old-fashioned epidemiology. Look for marker antibodies, signs of some sort of immunological event.

Do all of the above on gay rams – lots easier to get started, much less whining from those being vivisected.

Patrick Moore found the virus causing Kaposi’s sarcoma without any funding at all. I’m sure Peter Thiel could afford a serious try.
west-hunter  scitariat  discussion  ideas  reflection  analogy  model-organism  bio  disease  parasites-microbiome  medicine  epidemiology  heuristic  thick-thin  stories  experiment  track-record  intricacy  gotchas  low-hanging  🌞  patience  complex-systems  meta:medicine  multi  poast  methodology  red-queen  brain-scan  neuro  twin-study  immune  nature  gender  sex  sexuality  thiel  barons  gwern  stylized-facts  inference  apollonian-dionysian 
september 2017 by nhaliday
I hate every ape I see | West Hunter
Chimpanzees, although expensive, are really useful for medical research, since they’re much closer to humans than any other experimental animal. Yet the Feds are phasing out chimp research, and are sending them off to Club Chimp. Francis Collins, director of NIH, says that “new scientific methods and technologies have rendered their use in research largely unnecessary.” Collins is full of crap, as usual.
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may 2017 by nhaliday
Is soy good or bad for me? | Examine.com
The estimated per capita consumption of soybean oil increased >1000-fold from 1909 to 1999.
https://twitter.com/evolutionarypsy/status/892489043446988800 (increase started during 60s)

Clinical studies show no effects of soy protein or isoflavones on reproductive hormones in men: results of a meta-analysis: https://www.ncbi.nlm.nih.gov/pubmed/19524224
No significant effects of soy protein or isoflavone intake on T, SHBG, free T, or FAI were detected regardless of statistical model.

some good ones:
pros and cons: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3074428/
reproductive consequences: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3443604/
visuospatial memory: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC64558/
reject (in humans)t: https://www.ncbi.nlm.nih.gov/pubmed/19524224


A: yes
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may 2017 by nhaliday
Secular decline in testosterone levels - Rogue Health and Fitness
A Population-Level Decline in Serum Testosterone Levels in American Men: http://sci-hub.tw/10.1210/jc.2006-1375
Secular trends in sex hormones and fractures in men and women: http://www.eje-online.org/content/166/5/887.full.pdf
Small n and older sample, but interesting that while testosterone decreases have been large for men they’ve been even larger (in % terms) for women; wonder if this contributes to declining pregnancy and sexual frequency, rising depression.

Strangelove: https://youtu.be/N1KvgtEnABY?t=67

People offering human-centric explanations like cell phones: Note also that the sperm quality of dogs has decreased 30% since 1988.

mendelian rand.:
1 SD genetically instrumented increase in BMI was associated with a 0.25 SD decrease in serum testosterone

Ibuprofen linked to male infertility: study: https://nypost.com/2018/01/08/ibuprofen-linked-to-male-infertility-study/

Tucker Carlson: "Men Seem To Be Becoming Less Male": https://www.realclearpolitics.com/video/2018/03/08/tucker_carlson_men_seem_to_be_becoming_less_male.html
Carlson interviewed Dr. Jordan Peterson who blamed the "insidious" movement being driven by the "radical left" that teaches there a problem of "toxic masculinity." He said ideological policies focus on "de-emphasizing masculinity may be part of the problem."


Those are the numbers. They paint a very clear picture: American men are failing, in body, mind and spirit. This is a crisis. Yet our leaders pretend it’s not happening. They tell us the opposite is true: Women are victims, men are oppressors. To question that assumption is to risk punishment. Even as women far outpace men in higher education, virtually every college campus supports a women’s studies department, whose core goal is to attack male power. Our politicians and business leaders internalize and amplify that message. Men are privileged. Women are oppressed. Hire and promote and reward accordingly.

But it also hints at an almost opposite take: average testosterone levels have been falling for decades, so at this point these businessmen would be the only “normal” (by 1950s standards) men out there, and everyone else would be unprecedently risk-averse and boring.
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may 2017 by nhaliday
Low-Hanging Fruit: Consider the Ant | West Hunter
Which ought to be a reminder that biomimetics is a useful approach to invention:  If you can’t think of anything yourself, steal from the products of evolution.  It’s like an an Edisonian approach, only on steroids.

Along those lines, it is well known, to about 0.1% of the population, that some ants have agriculture. Some protect and herd aphids: others gather leaves as the feedstock for an edible fungus. Those leaf-cutting ants also carry symbiotic fungicide-producing  bacteria that protect against weed fungi [ herbicides invented well before atrazine or 2-4D]  Speaking of, if you really, really want to cause trouble, introduce leaf-cutting ants to Africa.
west-hunter  scitariat  discussion  proposal  low-hanging  innovation  bio  nature  agriculture  technology  ideas  discovery  the-trenches  alt-inst  science  model-organism  track-record 
april 2017 by nhaliday
Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology

Domestic dogs exhibit tremendous phenotypic diversity, including a greater variation in body size than any other terrestrial mammal. Here, we generate a high density map of canine genetic variation by genotyping 915 dogs from 80 domestic dog breeds, 83 wild canids, and 10 outbred African shelter dogs across 60,968 single-nucleotide polymorphisms (SNPs). Coupling this genomic resource with external measurements from breed standards and individuals as well as skeletal measurements from museum specimens, we identify 51 regions of the dog genome associated with phenotypic variation among breeds in 57 traits. The complex traits include average breed body size and external body dimensions and cranial, dental, and long bone shape and size with and without allometric scaling. In contrast to the results from association mapping of quantitative traits in humans and domesticated plants, we find that across dog breeds, a small number of quantitative trait loci (≤3) explain the majority of phenotypic variation for most of the traits we studied. In addition, many genomic regions show signatures of recent selection, with most of the highly differentiated regions being associated with breed-defining traits such as body size, coat characteristics, and ear floppiness. Our results demonstrate the efficacy of mapping multiple traits in the domestic dog using a database of genotyped individuals and highlight the important role human-directed selection has played in altering the genetic architecture of key traits in this important species.
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april 2017 by nhaliday
Cat Ladies | West Hunter
If toxo naturally can make people like cat piss, it’s already preadapted to become (with suitable genetic engineering) the model system for many kinds of infectious behavior modifiers.
west-hunter  sapiens  parasites-microbiome  disease  toxo-gondii  neuro  psychiatry  nature  discussion  commentary  gwern  medicine  🌞  embodied  scitariat  hmm  biotech  biohacking  retrofit  public-health  model-organism  pro-rata  epidemiology  drugs  pharma 
march 2017 by nhaliday
Evolution of sexual asymmetry | BMC Evolutionary Biology | Full Text
The clear dominance of two-gender sex in recent species is a notorious puzzle of evolutionary theory. It has at least two layers: besides the most fundamental and challenging question why sex exists at all, the other part of the problem is equally perplexing but much less studied. Why do most sexual organisms use a binary mating system? Even if sex confers an evolutionary advantage (through whatever genetic mechanism), why does it manifest that advantage in two, and exactly two, genders (or mating types)? Why not just one, and why not more than two?

Assuming that sex carries an inherent fitness advantage over pure clonal multiplication, we attempt to give a feasible solution to the problem of the evolution of dimorphic sexual asymmetry as opposed to monomorphic symmetry by using a spatial (cellular automaton) model and its non-spatial (mean-field) approximation. Based on a comparison of the spatial model to the mean-field approximation we suggest that spatial population structure must have played a significant role in the evolution of mating types, due to the largely clonal (self-aggregated) spatial distribution of gamete types, which is plausible in aquatic habitats for physical reasons, and appears to facilitate the evolution of a binary mating system.

Under broad ecological and genetic conditions the cellular automaton predicts selective removal from the population of supposedly primitive gametes that are able to mate with their own type, whereas the non-spatial model admits coexistence of the primitive type and the mating types. Thus we offer a basically ecological solution to a theoretical problem that earlier models based on random gamete encounters had failed to resolve.

Having sex, yes, but with whom? Inferences from fungi on the evolution of anisogamy and mating types: http://onlinelibrary.wiley.com/doi/10.1111/j.1469-185X.2010.00153.x/full
study  bio  evolution  sex  gender  roots  eden  EGT  dynamical  GT-101  🌞  symmetry  oceans  models  stat-mech  automata  deep-materialism  speculation  gender-diff  explanans  multi  model-organism  empirical  ecology 
march 2017 by nhaliday
An anatomically comprehensive atlas of the adult human brain transcriptome
In each brain independently, 84% of unique transcripts on the microarrays (29,412, referred to as genes for this manuscript) were found to be expressed in at least one structure (91.4% overlap in expressed gene sets between brains), consistent with the percentage of genes expressed in mouse brain by ISH (80%; ref. 1) and fetal human brain by microarrays (76%; ref. 11).
study  bio  sapiens  biodet  genetics  genomics  neuro  model-organism  comparison  GWAS  🌞  neuro-nitgrit 
march 2017 by nhaliday
Social Epistasis Amplifies the Fitness Costs of Deleterious Mutations, Engendering Rapid Fitness Decline Among Modernized Populations | SpringerLink
- Michael A. Woodley

We argue that in social species, interorganismal gene-gene interactions, which in previous literatures have been termed social epistasis, allow genomes carrying deleterious mutations to reduce via group-level pleiotropy the fitness of others, including noncarriers. This fitness reduction occurs by way of degradation of group-level processes that optimize the reproductive ecology of a population for intergroup competition through, among other mechanisms, suppression of free-riding.


Fitness indicators theory (Houle 2000; Miller 2000) predicts that the behavioral and physiological condition of prospective partners strongly influences female mate choice in particular, as these constitute honest indicators of underlying genetic quality. Furthermore, as deleterious mutations are pleiotropic (i.e., they can influence the development of multiple traits simultaneously), they are a source of genetic correlation among diverse behavioral and physiological domains, yielding a latent general fitness factor( f ). This optimizes the efficiency of sexual selection, as selection for quality with respect to one domain will increase the probability of selection for quality “across the board” (Houle 2000; Miller 2000). If purifying selection is primarily cryptic—working by virtue of those lower in f simply being less successful in competition for mates and therefore producing fewer offspring relative to those higher in the factor—then considerably less reproductive failure is needed to solve the mutation load paradox (19% instead of 88% based on simulations in Leseque et al. 2012).


Theoretical work involving humans suggests a loss of intrinsic fitness of around 1% per generation in the populations of modernized countries (Lynch 2016; Muller 1950). Thus, these might yet be undergoing mutational meltdown, albeit very gradually (i.e., over the course of centuries)


An interesting observation is that the fitness of the populations of modernized nations does appear to be rapidly decreasing—although not in a manner consonant with the direct action of deleterious mutations on the fitness of individuals (as per the mutation load paradox).


Increased education has furthermore encouraged individuals to trade fertility against opportunities to enhance their social status and earning power, with the largest fitness losses occurring among those with high status who potentially carry fewer deleterious mutations (i.e., by virtue of possessing higher levels of traits that exhibit some sensitivity to mutation load, such as general intelligence; Spain et al. 2015; Woodley of Menie et al. 2016a). Hitherto not considered is the possibility that the demographic transition represents a potential change in the fitness characteristics of the group-level extended phenotype of modernized populations, indicating that there might exist pathways through which deleterious mutations that accumulate due to ecological mildness could pathologically alter fertility tradeoffs in ways that might account for the maladaptive aspects of the fertility transition (e.g., subreplacement fertility; Basten, Lutz and Scherbov, 2013).


Cooperation, though offering significant fitness benefits to individual organisms and groups, involves some costs for cooperators in order to realize mutual gains for all parties. Free riders are individuals that benefit from cooperation without suffering any of the costs needed to sustain it. Hence, free riders enjoy a fitness advantage relative to cooperators via the former’s parasitism on the latter.


The balance of selection can alternate between the different levels depending on the sorts of selective challenges that a population encounters. For example, group selection may operate on human populations during times of intergroup conflict (i.e., warfare), whereas during times of peace, selection may tend to favor the fitness of individuals instead (Woodley and Figueredo 2013; Wilson 2002). A major factor that seems to permit group-level selection to be viable under certain ecological regimes is the existence of free-rider controls, i.e., features of the group’s social ecology that curb the reproductive fitness of the carriers of “selfish” genetic variants (MacDonald 1994; Wilson 2002).


High-status individuals participate in the generation and vertical cultural transmission of free-rider controls—these take the form of religious and ideological systems which make a virtue out of behaviors that overtly benefit the group, and a vice out of those that only favor individual-level fitness, via the promotion of ethnocentrism, martyrdom, and displays of commitment (MacDonald 1994, 2009, 2010; Wilson 2002). Humans are furthermore equipped with specialized mental adaptations for coordinating as part of a group, such as effortful control—the ability to override implicit behavioral drives via the use of explicit processing systems, which allow them to regulate their behavior based on what is optimal for the group (MacDonald 2008). The interaction between individuals of different degrees of status, i.e., those that generate and maintain cultural norms and those who are merely subject to them, therefore constitutes a form of social epistasis, as the complex patterns of interactions among genomes that characterize human culture have the effect of regulating both individual- and group-level (via the curbing of free-riding) fitness (MacDonald 2009, 2010).

Mutations that push the behavior of high-status individuals away from the promotion of group-selected norms may promote a breakdown of or otherwise alter these social epistatic interactions, causing dysregulation of the group’s reproductive ecology. Behavioral changes are furthermore a highly likely consequence of mutation accumulation, as “behavior” (construed broadly) is a large potential target for new mutations (Miller 2000; Lynch 2016) 1 owing to the fact that approximately 84% of all genes in the human genome are involved in some aspect of brain development and/or maintenance (Hawrylycz et al. 2012).

Consistent with the theorized role of group-level (cultural) regulatory processes in the maintenance of fitness optima, positive correlations exist between religiosity (a major freerider control; MacDonald 1994; Wilson 2002) and fertility, both at the individual differences and cross-cultural levels (Meisenberg 2011). Religiosity has declined in modernized nations—a process that has gone hand-in-hand with the rise of a values system called postmaterialism (Inglehart 1977), which is characterized by the proliferation of individualistic, secular, and antihierarchical values (Welzel 2013). The holding of these values is negatively associated with fertility, both at the individual level (when measured as political liberalism; Goldstone et al. 2011) and across time and cultures (Inglehart and Appel 1989). The rise of postmaterialist values is also associated with increasingly delayed onset of reproduction (Klien 1990) which directly increases the (population) mutation load.

Pathological Altruism

Some of the values embodied in postmaterialism have been linked to the pathological altruism phenomenon, i.e., forms of altruism that damage the intended recipients or givers of largesse (Oakley et al. 2012; Oakley 2013). Virtues associated with altruism such as kindness, fidelity, magnanimity, and heroism, along with quasi-moral traits associated with personality and mental health, may be under sexual selection and might therefore be sensitive, through the f factor, to the deleterious effects of accumulating mutations (Miller 2007).


Another form of pathologically altruistic behavior that Oakley (2013) documents is self-righteousness, which may be increasing, consistent with secular trend data indicating elevated levels of self-regarding behavior among Western populations (sometimes called the narcissism epidemic; Twenge and Campbell 2009). This sort of behavior constitutes a key component of the clever silly phenomenon in which the embrace of counterfactual beliefs is used to leverage social status via virtue signaling (e.g., the conflation of moral equality among individuals, sexes, and populations with biological equality) (Dutton and van der Linden 2015; Charlton 2009; Woodley 2010). There may be a greater number of influential persons inclined to disseminate such beliefs, in that the prevalence of phenotypes disposed toward egoistic behaviors may have increased in Western populations (per Twenge and coworkers’ research), and because egoists, specifically Machiavellians and narcissists, appear advantaged in the acquisition of elite societal stations (Spurk et al. 2015).

[Do Bad Guys Get Ahead or Fall Behind? Relationships of the Dark Triad of Personality With Objective and Subjective Career Success: http://sci-hub.tw/http://journals.sagepub.com/doi/abs/10.1177/1948550615609735

After controlling for other relevant variables (i.e., gender, age, job tenure, organization size, education, and work hours), narcissism was positively related to salary, Machiavellianism was positively related to leadership position and career satisfaction, and psychopathy was negatively related to all analyzed outcomes.]


By altering cultural norms, elite egoists may encourage the efflorescence of selfish behaviors against which some older and once highly influential cultural systems acted. For example, Christianity in various forms strongly promoted personal sacrifice for the good of groups and proscribed egoistic behaviors (Rubin 2015), but has declined significantly in terms of cultural power following modernization (Inglehart 1977). Thus, it is possible that a feedback loop exists wherein deleterious mutation accumulation raises population levels of egoism, either directly or indirectly, via the breakdown of developmental constraints on personality canalization; the resultantly greater number of egoists are then able to exploit relevant personality traits to attain positions of sociocultural influence; and through these … [more]
study  speculation  models  biodet  bio  sapiens  evolution  genetic-load  paternal-age  the-monster  slippery-slope  society  social-structure  free-riding  coordination  EGT  dynamical  🌞  fertility  dysgenics  eh  self-control  obesity  altruism  mutation  multi  twitter  social  commentary  perturbation  gnon  new-religion  science-anxiety  population-genetics  biophysical-econ  hmm  discipline  autism  scitariat  clown-world  epidemiology  malaise  sociology  demographic-transition  blowhards  model-organism  nonlinearity  civilization  expression-survival  universalism-particularism  order-disorder  trends  deep-materialism  values  ideology  domestication  cohesion  christopher-lasch  scale  patho-altruism  social-capital  behavioral-gen  madisonian  chart  nihil  aristos  piracy  theos  cultural-dynamics  roots  zeitgeist  rot  the-bones  counter-revolution  pdf  modernity  microfoundations  video  presentation  religion  christianity  health  longevity  ethnocentrism  genetic-correlation  👽  instinct 
march 2017 by nhaliday
Links 2/17: Site Your Sources | Slate Star Codex
The United States not only does poorly on education benchmark PISA, but each decile of wealth also does poorly compared to equivalent deciles in other countries. I find this surprising. Does this torpedo the theory that each US ethnic group does as well as its foreign counterparts, and US underperformance is a Simpson’s Paradox on ethnic distribution?

Twitter: @EveryoneIsDril.

New Study Finds Performance-Enhancing Drugs For Chess. Okay, fine, just modafinil, which we already knew about, but the exact pattern is interesting. Modafinil makes people take longer to make their moves, but the moves are ultimately better. That suggests that its advantage is not increasing IQ per se, but in giving people the increased attention span/concentration to work harder on finding good moves. I think this elegantly ties together a lot of stuff into a good explanation of modafinil’s cognitive-enhancing properties.

New Zealand Wants To Know How Peter Thiel Became A Secret Citizen. Give up, New Zealand; Peter Thiel is a citizen of any country he wants to be a citizen of. Also: Peter Thiel Denies California Governor Run Despite Mysterious Group’s Backing.

I was going to link to the paper Physics Envy May Be Hazardous To Your Wealth, but the part that actually interested me is small enough that I’m just going to include it here as a jpg (h/t Julia Galef).

Nature: Prevalence And Architecture Of De Novo Mutations In Developmental Disorders. There’s been a lot of debate over paternal age effects, and this paper helps clarify that by actually counting people’s de novo mutations and finding that children of older fathers (and to a lesser degree older mothers) have more of them. I am not sure to what degree this answers the objection that fathers with worse genes will tend to get married later; my impression is that it’s circumstantial evidence against (de novo mutations are more specific to paternal age than just bad genes) but not complete disproof.

Psssst, kid, wanna buy a parasitic worm? Key quote: “Those who experience the ‘hookworm bounce’ tend to describe it as ‘feeling as if they are teenagers again'” (h/t pistachi0n).

New paper in Crime And Delinquency: “We find no evidence that the number of fatal police shootings either increased or decreased post-Ferguson. Claims to the contrary are based on weak analyses of short-term trends.” This is especially surprising in light of claims that increased inner-city crime is caused by police withdrawing in order to prevent further fatal shootings; if that’s the police’s plan, it doesn’t seem to be working very well.

Intranasal ghrelin vaccine prevents obesity in mice.

Gene drive testing thwarted when organisms quickly develop resistance. There goes that idea.

New poll: Majority of Europeans support banning Muslim immigration. It’s an Internet-based poll, which is always cause for suspicion, but they seem to be a reputable organization and not the sort of group whose results are 100% due to trolling by 4chan, plus it’s consistent with some other results. Still pretty shocking and an existential-terror-level reminder of partisan bubbles. Also: Rasmussen finds most Americans support Trump’s refugee ban order.

Closely related: M.G. Miles makes the case for banning Muslim immigration. Maybe the first person I have seen make this case in a principled way; everyone else just seems to be screaming about stuff and demanding their readers reinterpret it into argument form. Also, he uses the word “terrorism” zero times, which seems like the correct number of times for a case of this sort. This is what people should be debating and responding to. Rebuttals by Americans would probably want to start with the differences between Muslim immigrants to Europe and Muslim immigrants to the US – Miles discusses the European case, but by my understanding these are very different populations with very different outcomes).

Second Enumerations podcast: Grognor reading interesting essays.

SSRN: Extreme Protest Tactics Reduce Popular Support For Social Movements: “We find across three experiments that extreme protest tactics decreased popular support for a given cause because they reduced feelings of identification with the movement. Though this effect obtained in tests of popular responses to extreme tactics used by animal rights, Black Lives Matter, and anti-Trump protests (Studies 1-3), we found that self-identified political activists were willing to use extreme tactics because they believed them to be effective for recruiting popular support.” Cf. The Toxoplasma Of Rage. (h/t Dain)

The Cagots were an underclass of people in medieval France whom everyone hated, with various purity laws around how decent people weren’t allowed to associate with/marry/touch/go near them. In the 1500s, the Pope personally intervened to tell the French to stop persecuting them, but the French ignored him and persecuted them more than ever. As far as anyone can tell, they looked, spoke, and acted just like everyone else, and exactly how they became so despised is one of the minor mysteries of medieval history.
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february 2017 by nhaliday
Information Processing: Epistasis vs additivity
On epistasis: why it is unimportant in polygenic directional selection: http://rstb.royalsocietypublishing.org/content/365/1544/1241.short
- James F. Crow

The Evolution of Multilocus Systems Under Weak Selection: http://www.genetics.org/content/genetics/134/2/627.full.pdf
- Thomas Nagylaki

Data and Theory Point to Mainly Additive Genetic Variance for Complex Traits: http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1000008
The relative proportion of additive and non-additive variation for complex traits is important in evolutionary biology, medicine, and agriculture. We address a long-standing controversy and paradox about the contribution of non-additive genetic variation, namely that knowledge about biological pathways and gene networks imply that epistasis is important. Yet empirical data across a range of traits and species imply that most genetic variance is additive. We evaluate the evidence from empirical studies of genetic variance components and find that additive variance typically accounts for over half, and often close to 100%, of the total genetic variance. We present new theoretical results, based upon the distribution of allele frequencies under neutral and other population genetic models, that show why this is the case even if there are non-additive effects at the level of gene action. We conclude that interactions at the level of genes are not likely to generate much interaction at the level of variance.
hsu  scitariat  commentary  links  study  list  evolution  population-genetics  genetics  methodology  linearity  nonlinearity  comparison  scaling-up  nibble  lens  bounded-cognition  ideas  bio  occam  parsimony  🌞  summary  quotes  multi  org:nat  QTL  stylized-facts  article  explanans  sapiens  biodet  selection  variance-components  metabuch  thinking  models  data  deep-materialism  chart  behavioral-gen  evidence-based  empirical  mutation  spearhead  model-organism  bioinformatics  linear-models  math  magnitude  limits  physics  interdisciplinary  stat-mech 
february 2017 by nhaliday
Bisphenol A (BPA)
Alternatives to BPA containers not easy for U.S. foodmakers to find: http://www.washingtonpost.com/wp-dyn/content/article/2010/02/22/AR2010022204830.html

Food is main source of BPA for consumers, thermal paper also potentially significant: https://www.efsa.europa.eu/en/press/news/130725
New data resulting from an EFSA call for data led to a considerable refinement of exposure estimates compared to 2006. For infants and toddlers (aged 6 months-3 years) average exposure from the diet is estimated to amount to 375 nanograms per kilogram of body weight per day (ng/kg bw/day) whereas for the population above 18 years of age (including women of child-bearing age) the figure is up to 132 ng/kg bw/day. By comparison, these estimates are less than 1% of the current Tolerable Daily Intake (TDI) for BPA (0.05 milligrams/kg bw/day) established by EFSA in 2006.

For all population groups above three years of age thermal paper was the second most important source of BPA after the diet (potentially accounting for up to 15% of total exposure in some population groups).

Among other key findings, scientists found dietary exposure to BPA to be the highest among children aged three to ten (explainable by their higher food consumption on a body weight basis). Canned food and non-canned meat and meat products were identified as major contributors to dietary BPA exposure for all age groups.

Tips for Avoiding BPA in Canned Food: http://www.breastcancerfund.org/reduce-your-risk/tips/avoid-bpa.html

Holding Thermal Receipt Paper and Eating Food after Using Hand Sanitizer Results in High Serum Bioactive and Urine Total Levels of Bisphenol A (BPA): http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0110509

Bisphenol S Disrupts Estradiol-Induced Nongenomic Signaling in a Rat Pituitary Cell Line: Effects on Cell Functions: http://ehp.niehs.nih.gov/1205826/
common substitute for BPA


Effect of probiotics, Bifidobacterium breve and Lactobacillus casei, on bisphenol A exposure in rats: https://www.ncbi.nlm.nih.gov/pubmed/18540113

What are the sources of exposure to eight frequently used phthalic acid esters in Europeans?: https://www.ncbi.nlm.nih.gov/pubmed/16834635
Food is a main source of DiBP, DnBP, and DEHP in consumers. In this case, consumers have very few possibilities to effectively reduce their exposure.

Are endocrine disrupting compounds a health risk in drinking water?: https://www.ncbi.nlm.nih.gov/pubmed/16823090

How to Avoid Phthalates (Even Though You Can't Avoid Phthalates): http://www.huffingtonpost.com/maia-james/phthalates-health_b_2464248.html
data  org:gov  hypochondria  endocrine  embodied-street-fighting  public-health  news  org:rec  business  tradeoffs  food  multi  study  summary  diet  top-n  org:euro  org:health  nitty-gritty  human-bean  checklists  cooking  embodied  human-study  science-anxiety  sanctity-degradation  intervention  epidemiology  bio  🐸  model-organism  list  health  hmm  idk  parasites-microbiome  street-fighting  evidence-based  objektbuch  embodied-pack  chart  roots  h2o  advice  org:lite  biodet  fluid  left-wing 
january 2017 by nhaliday
Ten Putative Contributors to the Obesity Epidemic
The obesity epidemic is a global issue and shows no signs of abating, while the cause of this epidemic remains unclear. Marketing practices of energy-dense foods and institutionally-driven declines in physical activity are the alleged perpetrators for the epidemic, despite a lack of solid evidence to demonstrate their causal role. While both may contribute to obesity, we call attention to their unquestioned dominance in program funding and public efforts to reduce obesity, and propose several alternative putative contributors that would benefit from equal consideration and attention. Evidence for microorganisms, epigenetics, increasing maternal age, greater fecundity among people with higher adiposity, assortative mating, sleep debt, endocrine disruptors, pharmaceutical iatrogenesis, reduction in variability of ambient temperatures, and intrauterine and intergenerational effects, as contributing factors to the obesity epidemic are reviewed herein. While the evidence is strong for some contributors such as pharmaceutical-induced weight gain, it is still emerging for other reviewed factors.
study  meta-analysis  survey  obesity  health  hypochondria  assortative-mating  sleep  model-organism  human-study  🐸  endocrine  metabolic  biodet  epigenetics  epidemiology  sociology  public-health  recent-selection 
january 2017 by nhaliday
Information Processing: Chimp intelligence is heritable
The more g-loaded, the more heritable, evolvable, and phenotypically variable: Homology with humans in chimpanzee cognitive abilities: http://www.sciencedirect.com/science/article/pii/S0160289615000495

Relaxed genetic control of cortical organization in human brains compared with chimpanzees: http://www.pnas.org/content/112/48/14799.abstract
We show that the morphology of the human cerebral cortex is substantially less genetically heritable than in chimpanzees and therefore is more responsive to molding by environmental influences. This anatomical property of increased plasticity, which is likely related to the human pattern of development, may underlie our species’ capacity for cultural evolution.

The heritability of chimpanzee and human brain asymmetry: http://rspb.royalsocietypublishing.org/content/283/1845/20161319
humans more lateralized and have lower heritability for degree of asymmetry

A Review of Cognitive Abilities in Dogs, 1911 Through 2016: More Individual Differences, Please!: http://www.lse.ac.uk/CPNSS/people/Staff/rosalind-arden/arden-psychological-science-2016.pdf

A possible structural correlate of learning performance on a colour discrimination task in the brain of the bumblebee: http://rspb.royalsocietypublishing.org/content/royprsb/284/1864/20171323.full.pdf
Here, we explored how the density of microglomeruli (synaptic complexes) within specific regions of the bumblebee (Bombus terrestris) brain relates to both visual learning and inter-individual differences in learning and memory performance on a visual discrimination task. Using whole-brain immunolabelling, we measured the density of microglomeruli in the collar region (visual association areas) of the mushroom bodies of the bumblebee brain. We found that bumblebees which made fewer errors during training in a visual discrimination task had higher microglomerular density.
hsu  scitariat  study  summary  nature  intelligence  iq  eden  model-organism  biodet  behavioral-gen  multi  neuro  bio  evolution  sapiens  variance-components  comparison  🌞  org:nat  flexibility  brain-scan  psychometrics  large-factor  pdf  psychology  cog-psych  cocktail  survey  psych-architecture  neuro-nitgrit  correlation  visuo 
december 2016 by nhaliday
Exposure to exogenous estrogen through intake of commercial milk produced from pregnant cows - Maruyama - 2009 - Pediatrics International - Wiley Online Library
7 men, 6 children, 5 women
After the intake of cow milk, serum estrone (E1) and progesterone concentrations significantly increased, and serum luteinizing hormone, follicle-stimulating hormone and testosterone significantly decreased in men. Urine concentrations of E1, estradiol, estriol and pregnanediol significantly increased in all adults and children. In four out of five women, ovulation occurred during the milk intake, and the timing of ovulation was similar among the three menstrual cycles.

mice study w/ n=60: https://www.sciencedaily.com/releases/2016/08/160803124441.htm
study  hmm  hypochondria  food  embodied  🐸  multi  gavisti  model-organism  human-study  endocrine  mena4  news  org:sci  science-anxiety  sanctity-degradation  intervention  null-result  public-health 
december 2016 by nhaliday
The Day Before Forever | West Hunter
Yesterday, I was discussing the possibilities concerning slowing, or reversing aging – why it’s obviously possible, although likely a hard engineering problem. Why partial successes would be valuable, why making use of the evolutionary theory of senescence should help, why we should look at whales and porcupines as well as Jeanne Calment, etc., etc. I talked a long time – it’s a subject that has interested me for many years.

But there’s one big question: why are the powers that be utterly uninterested ?

The Intercollegiate Studies Institute and the Abagail Adams Institute host a debate between Peter Thiel and William Hurlbut. Resolved: Technology Should Treat Death as an Enemy

What if you could buy an extra year of youth for a million bucks (real cost). Clearly this country ( or any country) can’t afford that for everyone. Some people could: and I think it would stick in many people’s craw. Even worse if they do it by harvesting the pineal glands of children and using them to manufacture a waxy nodule that forfends age.

This is something like the days of old, pre-industrial times. Back then, the expensive, effective life-extender was food in a famine year.

Once upon a time, I wrote a long spiel on life extension – before it was cool, apparently. I sent it off to an interested friend [a science fiction editor] who was at that time collaborating on a book with a certain politician. That politician – Speaker of the House, but that could be anyone of thousands of guys, right? – ran into my spiel and read it. His immediate reaction was that greatly extending the healthy human life span would be horrible – it would bankrupt Social Security ! Nice to know that guys running the show always have the big picture in mind.

Reminds me of a sf story [Trouble with Lichens] in which something of that sort is invented and denounced by the British trade unions, as a plot to keep them working forever & never retire.

He’s got the argument backward: sure, natural selection has not favored perfect repair, so says the evolutionary theory of of senescence. If it had, then we could perhaps conclude that perfect repair was very hard to achieve, since we don’t see it, at least not in complex animals.* But since it was not favored, since natural selection never even tried, it may not be that difficult.

Any cost-free longevity gene that made you live to be 120 would have had a small payoff, since various hazards were fairly likely to get you by then anyway… And even if it would have been favored, a similar gene that cost a nickel would not have been. Yet we can afford a nickel.

There are useful natural examples: we don’t have to start from scratch. Bowhead whales live over 200 years: I’m not too proud to learn from them.

Lastly , this would take a lot of work. So what?

*Although we can invent things that evolution can’t – we don’t insist that all the intermediate stages be viable.


doesn't think much of Aubrey de Gray: https://westhunt.wordpress.com/2013/07/21/of-mice-and-men/#comment-15832
I wouldn’t rely on Aubrey de Gray.

It might be easier to fix if we invested more than a millionth of a percent of GNP on longevity research. It’s doable, but hardly anyone is interested. I doubt if most people, including most MDs and biologists, even know that it’s theoretically possible.

I suppose I should do something about it. Some of our recent work ( Henry and me) suggests that people of sub-Saharan African descent might offer some clues – their funny pattern of high paternal age probably causes the late-life mortality crossover, it couldn’t hurt to know the mechanisms involved.

Make Room! Make Room!: https://westhunt.wordpress.com/2015/06/24/make-room-make-room/
There is a recent article in Phys Rev Letters (“Programed Death is Favored by Natural Selection in Spatial Systems”) arguing that aging is an adaptation – natural selection has favored mechanisms that get rid of useless old farts. I can think of other people that have argued for this – some pretty smart cookies (August Weismann, for example, although he later abandoned the idea) and at the other end of the spectrum utter loons like Martin Blaser.


There might could be mutations that significantly extended lifespan but had consequences that were bad for fitness, at least in past environments – but that isn’t too likely if mutational accumulation and antagonistic pleiotropy are the key drivers of senescence in humans. As I said, we’ve never seen any.

more on Martin Blaser:
This is off topic, but I just read Germs Are Us and was struck by the quote from Martin Blaser ““[causing nothing but harm] isn’t how evolution works” […] “H. pylori is an ancestral component of humanity.”
That seems to be the assumption that the inevitable trend is toward symbiosis that I recall from Ewald’s “Plague Time”. My recollection is that it’s false if the pathogen can easily jump to another host. The bulk of the New Yorker article reminded me of Seth Roberts.

I have corresponded at length with Blaser. He’s a damn fool, not just on this. Speaking of, would there be general interest in listing all the damn fools in public life? Of course making the short list would be easier.

I have corresponded at length with Blaser. He’s a damn fool, not just on this. Speaking of, would there be general interest in listing all the damn fools in public life? Of course making the short list would be easier.
enhancement  longevity  aging  discussion  west-hunter  scitariat  multi  thermo  death  money  big-picture  reflection  bounded-cognition  info-dynamics  scifi-fantasy  food  pinker  thinking  evolution  genetics  nature  oceans  inequality  troll  lol  chart  model-organism  shift  smoothness  🌞  🔬  track-record  low-hanging  aphorism  ideas  speculation  complex-systems  volo-avolo  poast  people  paternal-age  life-history  africa  natural-experiment  mutation  genetic-load  questions  study  summary  critique  org:nat  commentary  parasites-microbiome  disease  elite  tradeoffs  homo-hetero  contrarianism  history  medieval  lived-experience  EEA  modernity  malthus  optimization  video  facebook  social  debate  thiel  barons 
november 2016 by nhaliday
Physical activity in adulthood: genes and mortality : Scientific Reports
Observational studies report a strong inverse relationship between leisure-time physical activity and all-cause mortality. Despite suggestive evidence from population-based associations, scientists have not been able to show a beneficial effect of physical activity on the risk of death in controlled intervention studies among individuals who have been healthy at baseline. On the other hand, high cardiorespiratory fitness is known to be a strong predictor of reduced mortality, even more robust than physical activity level itself. Here, in both animals and/or human twins, we show that the same genetic factors influence physical activity levels, cardiorespiratory fitness, and risk of death. Previous observational follow-up studies in humans suggest that increasing fitness through physical activity levels could prolong life; however, our controlled interventional study with laboratory rats bred for low and high intrinsic fitness contrast with these findings. Also, we find no evidence for the suggested association using pairwise analysis among monozygotic twin pairs who are discordant in their physical activity levels. Based on both our animal and human findings, we propose that genetic pleiotropy might partly explain the frequently observed associations between high baseline physical activity and later reduced mortality in humans.

study  longevity  aging  genetics  fitness  idk  fitsci  variance-components  genetic-correlation  twin-study  evidence-based  🌞  org:nat  environmental-effects  c:**  biodet  intervention  cardio  hmm  null-result  human-study  model-organism  solid-study  multi  reddit  social  commentary  ssc  gwern  ratty 
september 2016 by nhaliday

bundles : metasci

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