hallucigenia + imagej   1

Bemovi, software to extract BEhaviour and MOrphology from VIdeos
Bemovi is an R package that allows to extract abundance, behaviour and morphology of individual organisms from video sequences. The package relies on R - the statistical computing environment and ImageJ, as well as the ParticleTracker plug-in developed for ImageJ.

For a high level description of the package and its functions, as well as information to its application and validation see the following publication (or run citation(“bemovi”) in R):

Pennekamp, Frank, Nicolas Schtickzelle, and Owen L. Petchey. 2015. “Bemovi, Software for Extracting BEhaviour and MOrphology from VIdeos, illustrated with anlyses of microbes”, Ecology & Evolution, June 2015. DOI: 10.1002/ece3.1529

This web site provides accompanying information how to get started with bemovi, from installing the necessary dependencies, conducting analyses and processing the data, to measuring morphological and behavioural traits and predict species identities based on these traits.
movement_ecology  statistics:movement  video_analysis  image_processing  R  R_packages  imageJ 
october 2017 by hallucigenia

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