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Altruism in a volatile world | Nature
The evolution of altruism—costly self-sacrifice in the service of others—has puzzled biologists1 since The Origin of Species. For half a century, attempts to understand altruism have developed around the concept that altruists may help relatives to have extra offspring in order to spread shared genes2. This theory—known as inclusive fitness—is founded on a simple inequality termed Hamilton’s rule2. However, explanations of altruism have typically not considered the stochasticity of natural environments, which will not necessarily favour genotypes that produce the greatest average reproductive success3,4. Moreover, empirical data across many taxa reveal associations between altruism and environmental stochasticity5,6,7,8, a pattern not predicted by standard interpretations of Hamilton’s rule. Here we derive Hamilton’s rule with explicit stochasticity, leading to new predictions about the evolution of altruism. We show that altruists can increase the long-term success of their genotype by reducing the temporal variability in the number of offspring produced by their relatives. Consequently, costly altruism can evolve even if it has a net negative effect on the average reproductive success of related recipients. The selective pressure on volatility-suppressing altruism is proportional to the coefficient of variation in population fitness, and is therefore diminished by its own success. Our results formalize the hitherto elusive link between bet-hedging and altruism4,9,10,11, and reveal missing fitness effects in the evolution of animal societies.
study  bio  evolution  altruism  kinship  stylized-facts  models  intricacy  random  signal-noise  time  order-disorder  org:nat  EGT  cooperate-defect  population-genetics  moments  expectancy  multiplicative  additive 
march 2018 by nhaliday
light - Why doesn't the moon twinkle? - Astronomy Stack Exchange
As you mention, when light enters our atmosphere, it goes through several parcels of gas with varying density, temperature, pressure, and humidity. These differences make the refractive index of the parcels different, and since they move around (the scientific term for air moving around is "wind"), the light rays take slightly different paths through the atmosphere.

Stars are point sources
…the Moon is not
nibble  q-n-a  overflow  space  physics  trivia  cocktail  navigation  sky  visuo  illusion  measure  random  electromag  signal-noise  flux-stasis  explanation  explanans  magnitude  atmosphere  roots 
december 2017 by nhaliday
What are the Laws of Biology?
The core finding of systems biology is that only a very small subset of possible network motifs is actually used and that these motifs recur in all kinds of different systems, from transcriptional to biochemical to neural networks. This is because only those arrangements of interactions effectively perform some useful operation, which underlies some necessary function at a cellular or organismal level. There are different arrangements for input summation, input comparison, integration over time, high-pass or low-pass filtering, negative auto-regulation, coincidence detection, periodic oscillation, bistability, rapid onset response, rapid offset response, turning a graded signal into a sharp pulse or boundary, and so on, and so on.

These are all familiar concepts and designs in engineering and computing, with well-known properties. In living organisms there is one other general property that the designs must satisfy: robustness. They have to work with noisy components, at a scale that’s highly susceptible to thermal noise and environmental perturbations. Of the subset of designs that perform some operation, only a much smaller subset will do it robustly enough to be useful in a living organism. That is, they can still perform their particular functions in the face of noisy or fluctuating inputs or variation in the number of components constituting the elements of the network itself.
scitariat  reflection  proposal  ideas  thinking  conceptual-vocab  lens  bio  complex-systems  selection  evolution  flux-stasis  network-structure  structure  composition-decomposition  IEEE  robust  signal-noise  perturbation  interdisciplinary  graphs  circuits  🌞  big-picture  hi-order-bits  nibble  synthesis 
november 2017 by nhaliday
What Does a “Normal” Human Genome Look Like? | Science
So, what have our first glimpses of variation in the genomes of generally healthy people taught us? First, balancing selection, the evolutionary process that favors genetic diversification rather than the fixation of a single “best” variant, appears to play a minor role outside the immune system. Local adaptation, which accounts for variation in traits such as pigmentation, dietary specialization, and susceptibility to particular pathogens is also a second-tier player. What is on the top tier? Increasingly, the answer appears to be mutations that are “deleterious” by biochemical or standard evolutionary criteria. These mutations, as has long been appreciated, overwhelmingly make up the most abundant form of nonneutral variation in all genomes. A model for human genetic individuality is emerging in which there actually is a “wild-type” human genome—one in which most genes exist in an evolutionarily optimized form. There just are no “wild-type” humans: We each fall short of this Platonic ideal in our own distinctive ways.
article  essay  org:nat  🌞  bio  biodet  genetics  genomics  mutation  genetic-load  QTL  evolution  sapiens  survey  summary  coding-theory  enhancement  signal-noise  egalitarianism-hierarchy  selection  tradeoffs  immune  recent-selection  perturbation  nibble  ideas  forms-instances 
november 2017 by nhaliday
If Quantum Computers are not Possible Why are Classical Computers Possible? | Combinatorics and more
As most of my readers know, I regard quantum computing as unrealistic. You can read more about it in my Notices AMS paper and its extended version (see also this post) and in the discussion of Puzzle 4 from my recent puzzles paper (see also this post). The amazing progress and huge investment in quantum computing (that I presented and update  routinely in this post) will put my analysis to test in the next few years.
tcstariat  mathtariat  org:bleg  nibble  tcs  cs  computation  quantum  volo-avolo  no-go  contrarianism  frontier  links  quantum-info  analogy  comparison  synthesis  hi-order-bits  speedometer  questions  signal-noise 
november 2017 by nhaliday
Why are children in the same family so different from one another? - PubMed - NCBI
- Plomin et al

The article has three goals: (1) To describe quantitative genetic methods and research that lead to the conclusion that nonshared environment is responsible for most environmental variation relevant to psychological development, (2) to discuss specific nonshared environmental influences that have been studied to date, and (3) to consider relationships between nonshared environmental influences and behavioral differences between children in the same family. The reason for presenting this article in BBS is to draw attention to the far-reaching implications of finding that psychologically relevant environmental influences make children in a family different from, not similar to, one another.
study  essay  article  survey  spearhead  psychology  social-psych  biodet  behavioral-gen  🌞  methodology  environmental-effects  signal-noise  systematic-ad-hoc  composition-decomposition  pdf  piracy  volo-avolo  developmental  iq  cog-psych  variance-components  GxE  nonlinearity  twin-study  personality  sib-study 
october 2017 by nhaliday
Does Learning to Read Improve Intelligence? A Longitudinal Multivariate Analysis in Identical Twins From Age 7 to 16
Stuart Richie, Bates, Plomin

SEM: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4354297/figure/fig03/

The variance explained by each path in the diagrams included here can be calculated by squaring its path weight. To take one example, reading differences at age 12 in the model shown in Figure​Figure33 explain 7% of intelligence differences at age 16 (.262). However, since our measures are of differences, they are likely to include substantial amounts of noise: Measurement error may produce spurious differences. To remove this error variance, we can take an estimate of the reliability of the measures (generally high, since our measures are normed, standardized tests), which indicates the variance expected purely by the reliability of the measure, and subtract it from the observed variance between twins in our sample. Correcting for reliability in this way, the effect size estimates are somewhat larger; to take the above example, the reliability-corrected effect size of age 12 reading differences on age 16 intelligence differences is around 13% of the “signal” variance. It should be noted that the age 12 reading differences themselves are influenced by many previous paths from both reading and intelligence, as illustrated in Figure​Figure33.

...

The present study provided compelling evidence that improvements in reading ability, themselves caused purely by the nonshared environment, may result in improvements in both verbal and nonverbal cognitive ability, and may thus be a factor increasing cognitive diversity within families (Plomin, 2011). These associations are present at least as early as age 7, and are not—to the extent we were able to test this possibility—driven by differences in reading exposure. Since reading is a potentially remediable ability, these findings have implications for reading instruction: Early remediation of reading problems might not only aid in the growth of literacy, but may also improve more general cognitive abilities that are of critical importance across the life span.

Does Reading Cause Later Intelligence? Accounting for Stability in Models of Change: http://sci-hub.cc/10.1111/cdev.12669
Results from a state–trait model suggest that reported effects of reading ability on later intelligence may be artifacts of previously uncontrolled factors, both environmental in origin and stable during this developmental period, influencing both constructs throughout development.
study  albion  scitariat  spearhead  psychology  cog-psych  psychometrics  iq  intelligence  eden  language  psych-architecture  longitudinal  twin-study  developmental  environmental-effects  studying  🌞  retrofit  signal-noise  intervention  causation  graphs  graphical-models  flexibility  britain  neuro-nitgrit  effect-size  variance-components  measurement  multi  sequential  time  composition-decomposition  biodet  behavioral-gen  direct-indirect  systematic-ad-hoc  debate  hmm  pdf  piracy  flux-stasis 
september 2017 by nhaliday
New Theory Cracks Open the Black Box of Deep Learning | Quanta Magazine
A new idea called the “information bottleneck” is helping to explain the puzzling success of today’s artificial-intelligence algorithms — and might also explain how human brains learn.

sounds like he's just talking about autoencoders?
news  org:mag  org:sci  popsci  announcement  research  deep-learning  machine-learning  acm  information-theory  bits  neuro  model-class  big-surf  frontier  nibble  hmm  signal-noise  deepgoog  expert  ideas  wild-ideas  summary  talks  video  israel  roots  physics  interdisciplinary  ai  intelligence  shannon  giants  arrows  preimage  lifts-projections  composition-decomposition  characterization  markov  gradient-descent  papers  liner-notes  experiment  hi-order-bits  generalization  expert-experience  explanans  org:inst  speedometer 
september 2017 by nhaliday
My Old Boss | West Hunter
Back in those days, there was interest in finding better ways to communicate with a submerged submarine.  One method under consideration used an orbiting laser to send pulses of light over the ocean, using a special wavelength, for which there was a very good detector.  Since even the people running the laser might not know the boomer’s exact location, while weather and such might also interfere,  my old boss was trying to figure out methods of reliably transmitting messages when some pulses were randomly lost – which is of course a well-developed subject,  error-correcting codes. But he didn’t know that.  Hadn’t even heard of it.

Around this time, my old boss was flying from LA to Washington, and started talking with his seatmate about this  submarine communication problem.  His seatmate – Irving S. Reed – politely said that he had done a little work on some similar problems.  During this conversation, my informant, a fellow minion sitting behind my old boss, was doggedly choking back hysterical laughter, not wanting to interrupt this very special conversation.
west-hunter  scitariat  stories  reflection  working-stiff  engineering  dirty-hands  electromag  communication  coding-theory  giants  bits  management  signal-noise 
september 2017 by nhaliday

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