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Science’s Inference Problem: When Data Doesn’t Mean What We Think It Does - The New York Times
Brian Skyrms emphasize another possible cause of the so-called replication crisis: the tendency, even among “working scientists,” to equate probability with frequency. Frequency is a measure of how often a certain event occurs; it concerns facts about the empirical world. Probability is a measure of rational degree of belief; it concerns how strongly we should expect a certain event to occur. Linking frequency and probability is hardly an error. (Indeed, the notion that in large enough numbers frequencies can approximate probabilities is Diaconis and Skyrms’s fourth “great idea” about chance.) But failing to distinguish the two concepts when testing hypotheses, they warn, “can have pernicious effects.”

Consider statistical significance, a standard scientists often use to judge the worth of their findings. The goal of an experiment is to make an inductive inference: to determine how confident you should be in a hypothesis, given the data. You suspect a coin is weighted (the hypothesis), so you flip it five times and it comes up heads each time (the data); what is the likelihood that your hypothesis is correct? A notable feature of the methodology of statistical significance is that it does not directly pose this question. To determine statistical significance, you ask something more roundabout: What is the probability of getting the same data as a result of random “noise”? That is, what are the odds of getting five heads in a row assuming the coin is not weighted? If that figure is small enough — less than 5 percent is a commonly used threshold — your finding is judged statistically significant. Since the chance of flipping five heads in a row with a fair coin is only about 3 percent, you have cleared the bar.

But what have you found? Diaconis and Skyrms caution that if you are not careful, you can fall prey to a kind of bait-and-switch. You may think you are learning the probability of your hypothesis (the claim that the coin is weighted), given the frequency of heads. But in fact you are learning the probability of the frequency of heads, given the so-called null hypothesis (the assumption there is nothing amiss with the coin). The former is the inductive inference you were looking to make; the latter is a deductive inference that, while helpful in indicating how improbable your data are, does not directly address your hypothesis. Flipping five heads in a row gives some evidence the coin is weighted, but it hardly amounts to a discovery that it is. Because too many scientists rely on the “mechanical” use of this technique, Diaconis and Skyrms argue, they fail to appreciate what they have — and have not — found, thereby fostering the publication of weak results.
probability  frequency  statisticalsignificance 
yesterday by johndodds
Some good "Statistics for programmers" resources
This post is basically a list of books & other resources that teach statistics using programming.
statistics  Programming  learning  hypothesis-testing  confidence-intervals  probability  t-tests  normal-distribution  boostrapping 
5 days ago by rishaanp
Cut The Knot
Website of Alexander Bogomolny.
Math puzzles and philosophy.
Followed by NNT.
math  mathematics  philosophy  puzzles  probability 
5 days ago by drmeme

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