jupyter   4348

« earlier    

The Scientific Paper Is Obsolete
"maniac in the middle"

"I spoke to a neuroscientist-turned-software-developer who contributed to Jupyter, who told me that the professor in charge of his former lab was originally an electrophysiologist—he actually measured neuronal activity with implanted electrodes. 'This kind of data is basically so costly, so expensive, and so good,' he said, that nobody would ever share it. 'You collect one batch of data and you can mine it for the rest of your career.'"
TheAtlantic  science  research  publication  data  computation  JamesSomers  2018  publishing  Python  Mathematica  Jupyter  StephenWolfram  ESR  Linux 
6 hours ago by cosmic
BioJupies: Automated Generation of Interactive Notebooks for RNA-seq Data Analysis in the Cloud | bioRxiv
nteractive notebooks can make bioinformatics data analyses more transparent, accessible and reusable. However, creating notebooks requires computer programming expertise. Here we introduce BioJupies, a web server that enables automated creation, storage, and deployment of Jupyter Notebooks containing RNA-seq data analyses. Through an intuitive interface, novice users can rapidly generate tailored reports to analyze and visualize their own raw sequencing files, their gene expression tables, or fetch data from >5,500 published studies containing >250,000 preprocessed RNA-seq samples. Generated notebooks have executable code of the entire pipeline, rich narrative text, interactive data visualizations, and differential expression and enrichment analyses. The notebooks are permanently stored in the cloud and made available online through a persistent URL. The notebooks are downloadable, customizable, and can run within a Docker container.
RNA  bioinformatics  Jupyter  notebook  Docker  analytics  visualization 
yesterday by euler
Jupyter Notebook Extensions – Towards Data Science
pip install jupyter_contrib_nbextensions && jupyter contrib nbextension install
jupyter  python 
yesterday by arthuralvim
Microsoft Recommenders examples
This repository provides examples and best practices for building recommendation systems, provided as Jupyter notebooks.
python  jupyter  machinelearning  recommendations 
2 days ago by jazwiecki
Doing the newlsetter thing... first issue of the year should be out tomorrow, erm, which…
jupyter  TrackingJupyter  from twitter
3 days ago by psychemedia

« earlier    

related tags

2018  201901  adoption  advanced  altair  analyst  analytics  astronomy  aws  bestpractices  bigdata  bioinformatics  black  blog  book  books  cheat  cheatsheet  cloud  computation  computer-science  converter  cookiecutter  corporate  corporateadoption  data-science  data.science  data  data_science  datasci  datascience  dataviz  deeplearning  deeplearningsem?  dev  diff  docker  dsl  ec2  education  emacs  engineer  environment  esr  extension  f#  formatting  fpga  fsharp  gh  gist  git  github  google  gpu  hdl  hosted  hosting  howto  hpc  ibm  integration  interactive  interesting  ipynb  ipython  jamessomers  js  jupyter4edu  jupyterlab  jupytext  kubernetes  lang:en  linux  mac  machine-learning  machinelearning  markdown  math  mathematica  ml  mlssafrica  modeling  nb  nbdime  netflix  notebook  notebooks  online  opensource  org-mode  osx  pandas  paypal  performance  plugin  podcast  post  presentation  programming  proscons  publication  publishing  py  python  r  recommendations  reference  repository  reproducibility  research  rna  salesforce  scala  science  scientist  scimax  sciprog  server  service  sheet  shortcut  shortcuts  software  spark  startup  statistics  stephenwolfram  subsurface  template  tensorflow  theatlantic  tools  trackingjupyter  tut  tutorial  vega  versioncontrol  vis  visualization  vitopython  vscode  work  workflow 

Copy this bookmark: