anapathysubramanian

Someone on twitter posted a link to this as an example of actual "data integration." Mmm... color me skeptical (here "data integration" reads to me as a synonym for "ad hoc systems biology,") but I need to read it more closely.

"We present a new method to measure and correct for these influences using a simple graphical model. Our model does not rely on existing gene annotations, and model selection is performed automatically making it applicable with few assumptions."

The discussion of errors in annotation being propagated by basing one annotation on an earlier, erroneous or hypothetical annotation is excellent.

Predicting phosphorylation sites for specific kinases

Predicting phosphorylation sites

PKC phosphorylation site predictions for Drosophila Orco

Phosphorylation site prediciton for Drosophila Orco

Prediction of calmodulin binding sites in Drosophila Orco