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BioJupies: Automated Generation of Interactive Notebooks for RNA-seq Data Analysis in the Cloud | bioRxiv
nteractive notebooks can make bioinformatics data analyses more transparent, accessible and reusable. However, creating notebooks requires computer programming expertise. Here we introduce BioJupies, a web server that enables automated creation, storage, and deployment of Jupyter Notebooks containing RNA-seq data analyses. Through an intuitive interface, novice users can rapidly generate tailored reports to analyze and visualize their own raw sequencing files, their gene expression tables, or fetch data from >5,500 published studies containing >250,000 preprocessed RNA-seq samples. Generated notebooks have executable code of the entire pipeline, rich narrative text, interactive data visualizations, and differential expression and enrichment analyses. The notebooks are permanently stored in the cloud and made available online through a persistent URL. The notebooks are downloadable, customizable, and can run within a Docker container.
RNA  bioinformatics  Jupyter  notebook  Docker  analytics  visualization 
1 hour ago by euler
Platforms - Kitware, Inc.
We develop, maintain, and support a wide array of toolkits and applications that are used by tens of thousands of software developers, researchers, and practitioners worldwide. These projects all use commercial-friendly, permissive open source licenses and work across a variety of platforms. We offer books, support, training courses, and customized consulting contracts based on our open source platforms.
visualization  3D  rendering  datascience  analytics 
20 hours ago by euler
The Data Warehouse is dead – long live the Data Warehouse
"Data warehouse technology is shifting to the cloud with much ballyhoo around new entrants. But do they have the muscle to compete with the tried, tested and surviving incumbents?"
analytics  planning  and  data  analysis  warehouse 
yesterday by jonerp
NRF to retailers, and Wall Street – we need better metrics to assess retail health
"Amidst all the next-gen tech at NRF's Big Show 2019, a different and vitally important debate ensued: are retailers even measuring the right things? Here's what I learned about NRF's push to broach a dialogue on new retail metrics."
analytics  planning  and  data  analysis  crm  customer  experience  retail  e-commerce  the  omni-channel 
2 days ago by jonerp
NRF 2019 – All retailers are in the data business now; Chick-fil-A shows why.
"The big lesson from NRF 2019 is that you're not winning in retail without tackling your data problem - and turning it into an asset. Here's an illustrated view of how Chick-fil-A approached this problem, and how modern data analytics, in this case Tableau, fits in."
analytics  planning  and  data  analysis  crm  customer  experience  digital  enterprise  in  the  real  world  retail  e-commerce  omni-channel 
3 days ago by jonerp
Fathom Analytics
Fathom Analytics provides simple and useful website stats that focus on user privacy.
analytics  webdev 
3 days ago by justusthane
ClickHouse — open source distributed column-oriented DBMS
ClickHouse is an open source column-oriented database management system capable of real time generation of analytical data reports using SQL queries.

Can be used for log/event data with MergeTree engine (date field required), some similarities to BigQuery with its day-only partitioning.

Compare to Redshift, Vertica, BigQuery.
opensource  analytics  database 
3 days ago by tobym
Seeing Theory
A visual introduction to probability and statistics.
analytics  education  visualization  data  probability  statistics  interactive 
3 days ago by eugenexxv

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